barSeed - Barley Seed Development Database

Probe CUST_21188_PI390587928

Source Contig U35_38811

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21188_PI390587928	Hv_44K_v2	TGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTCAAAATTCCA	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44488.4	1949	2e-24	464 - 523	100	60 / 60	plus	None
MLOC	MLOC_44488.2	1597	2e-24	541 - 600	100	60 / 60	plus	None
MLOC	MLOC_44488.3	1685	2e-24	505 - 564	100	60 / 60	plus	None
MLOC	MLOC_44488.1	1990	2e-24	499 - 558	100	60 / 60	plus	None
JLOC1	JLOC1_28835.2	2048	8e-25	559 - 618	100	60 / 60	plus
JLOC1	JLOC1_28835.1	1988	8e-25	499 - 558	100	60 / 60	plus
Harvest21	ABC34746	626	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_38811	626	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_38811 626 Hv_44K_v2
GGGTTCTGCCTGCCCAAGAAGAGGCGGCGACGTCTCCGCACTTCCCTCCCTCCCTCCCTC
CTCCCCGCCGTCGCCGCCGCCGCCGCCCAACCGCCCCAAGTCAGGCAGCTCACTGGCTTG
AGAGGGTCCTTGGGGGAGAGCAAGTATGAGTGGCCAGAGGCAATGCTCGTCGCAGCCGCA
GTTTATGACTAGCGTCGGGCAGAACAATACCTCGAATGGACCGGGGACCCCTCTTATTGA
CAGCATAGATGTTGATCAGATTGTTATCCCTGAGAAAAATAGCTGGAAGAACTTATTTTC
ATACATAGGGCCCGGTTTTCTCGTCTCTATCGCCTATATCGATCCTGGCAATTTTGAGAC
GGACCTACAGGCTGGAGCACAGTACAAATACGAGCTTCTTTGGATCATACTTATTGCATC
ATGTGCTGCACTTGTAATTCAATCGCTTGCAGCCAGCCTAGGTGTTGTGACTGGGAAGCA
TCTTGCTGAGCACTGCAGGGCTGAATATCCCAAGGTCACAAATTTCATCTTATGGATTCT
TGCAGAACTGGCTGTAGTTGCGTGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTT
GAACATGCTCTTCAAAATTCCAATAT

Homology of Contig U35_38811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46310.3	493	7e-99	protein\|metal transporter Nramp6, putative, expressed
Brachypodium v1_2	Bradi1g32640.1	552	3e-103
Arabidopsis v10	AT1G15960.1	527	5e-75	\| Symbols: NRAMP6, ATNRAMP6 \| NRAMP metal ion transporter 6 \| chr1:5482202-5485066 REVERSE LENGTH=527