barSeed - Barley Seed Development Database

Probe CUST_21182_PI390587928

Source Contig U35_14861

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21182_PI390587928	Hv_44K_v2	GTTCATCAGTTTGTATTCCATCAGCAACTGAGCAAATCCATTACCTTCTCTGCTAAAAAA	742	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.184	0.575	0.672	1.431	2.855	4.088
Raw	438.932	2189.187	2047.723	6828.817	4632.640	7472.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6787.1	1238	3e-22	1143 - 1198	100	56 / 56	plus	ABC02006 ABC02010 ABC02012 ABC38919 ABC48277
MLOC	MLOC_6787.3	664	3e-22	569 - 624	100	56 / 56	plus	ABC02006 ABC02010 ABC02012 ABC38919 ABC48277
JLOC1	JLOC1_4441.1	1061	1e-22	966 - 1021	100	56 / 56	plus
Harvest21	ABC02006	813	3e-25	743 - 802	100	60 / 60	plus	ABC02006
Harvest21	ABC38919	275	5e-23	82 - 137	100	56 / 56	minus	ABC38919
Harvest35	U35_14861	885	3e-25	743 - 802	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_14861 885 Hv_44K_v2
GCACCGATCAAAGAGCTCCAGTAAGCAATCGCTCATCCTTCCGCTTCCAACGCCAGCCAA
ATCGTCGATTCCTTGCACCAGCAGCTCGAATCCCCACCGACAATGTCGCTGATCCGCCGC
AGCAACGTGTTCGACCCCTTCTCCCTCGACTTCTTCGACCCCTTCGACGGCTTCCCCTTC
GGCTCCGGCAGCAGCAACAGCGGCGGCAGCCTCGTCCCGCGCACCTCCTCTGACACGGCG
GCCTTCGCGGGGGCGCGCATCGACTGGAAGGAGACGCCCGAGGCGCACGTGTTCAAGGCG
GACGTGCCGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTGGAGGACGGCAACATCCTC
CAGATCAGCGGCGAGAGGAACAAGGAGCAGGAGGAGAAGACGGACACCTGGCACAGGGTG
GAGCGCAGCAGCGGCAAGTTCCTGCGCAGGTTCAGGCTCCCGGAGAACGCCAAGGCGGAG
CAGGTGAAGGCGTCCATGGAGAACGGCGTGCTCACCGTCACCGTGCCCAAGGAGGAGGCC
AAGAATCCTGAGGTCAAGGCCATCCAGATCTCCGGCTAGGCGTCGGCGTGCTCGCGGCCC
GGTCGTGGCGATGGAATAAAATCAGAGTCCGGCTGTCAGTCTAGTGCTCTAGTGTTGTGT
GCGAATGGTCCGATGTTCATTAGTCTGTATTTTGATTCAGTGTTTTGAATCTCTCGCGTC
TGTATTTTAGAGTCCAAAGTTTGTTCATCAGTTTGTATTCCATCAGCAACTGAGCAAATC
CATTACCTTCTCTGCTAAAAAAAAAAAAAAAAAGGTCATGCGAACGCCCATCAGCAACTG
AGCAAATCCATTACCTTCTCTGCTATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15960.1	162	8e-63	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi1g67080.1	159	9e-66
Arabidopsis v10	AT3G46230.1	156	2e-53	\| Symbols: ATHSP17.4, HSP17.4 \| heat shock protein 17.4 \| chr3:16984263-16984733 REVERSE LENGTH=156