barSeed - Barley Seed Development Database

Probe CUST_21177_PI390587928

Source Contig U35_14866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21177_PI390587928	Hv_44K_v2	TACTCCTGTGATCAACTTGTACTGATTTGAACGAGCGAGTCACAGTTTTCTCTTAAAAAA	841	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66541.1	785	3e-22	69 - 124	100	56 / 56	minus	ABC02006 ABC02008 ABC02010 ABC02012 ABC48277
MLOC	MLOC_66541.2	1126	3e-22	69 - 124	100	56 / 56	minus	ABC02006 ABC02008 ABC02010 ABC02012 ABC48277
JLOC1	JLOC1_43862.1	1102	1e-22	141 - 196	100	56 / 56	minus
Harvest21	ABC48277	550	3e-25	12 - 71	100	60 / 60	minus	ABC48277
Harvest35	U35_14866	912	3e-25	842 - 901	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_14866 912 Hv_44K_v2
CACGAGTGTCTAGAAACCGACAGTGCACTACGTACGTAGCTTACTTGCCGGAAACAACGA
AAGGCAAACAGCAAAGCTTATAACACATCCGAAGCATCATCCATCCCCTGAGTTGACAGC
TTCCTAATCGCAGTTCCTCCTCGCCCAAATCGAGCAGCCATGTCGCTGATTCCCCGCGGC
AACGCCTTCGACCCCTTCTCCGTCGACCTCTGGAACCCCTTCGACGGCTTCCCCTTCGGC
TCCGGCAGCAGCAGCAGTGGTGGCAGCCTCTTCCCCTCGTTCCCGCGCACATCCTCTGAC
ACGGCGGCCTTCGCTGGGGCGCGCATCGACTGGAAGGAGACGCCCGAGGCGCACGTGTTC
AAGGCGGACGTGCCGGGGCTGAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGACGGCAAC
ATCCTCCAGATCAGCGGCGAGCGGAACAAGGAGCAGGAGGAGAAGACGGACACCTGGCAC
AGGGTGGAGCGCAGCAGCGGCAAGTTCCTGCGCAGGTTCAGGCTCCCGGAGGACGCCAAG
GCGGACCAGATCAAGGCGGCCATGGAGAACGGTGTGCTCACCGTCACTGTGCCCAAAGAG
GAGGCCAAGAAACCCGAGATCAAGTCCATCCAGATCTCCGGCTAGGCTGCTGCAAGATTA
AGGTTCAGTTCGCTGCTCTAAGGTTCAGCTCGCTCTTTTGTGCCTTTAGCTGGTGTGGAT
ATGGGTCCGTGTTGAGCATCAAGTGTGGCCTTGTCAGTGCTGTGTTCAATGTCCGTGTCC
AGAGTTACTCATGTAATGCAAGTTAGTCATGTAATGCAAGCATCGAGTCCAAAGTGTGAT
CTACTCCTGTGATCAACTTGTACTGATTTGAACGAGCGAGTCACAGTTTTCTCTTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_14866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15960.1	162	3e-70	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi1g67080.1	159	5e-70
Arabidopsis v10	AT3G46230.1	156	8e-57	\| Symbols: ATHSP17.4, HSP17.4 \| heat shock protein 17.4 \| chr3:16984263-16984733 REVERSE LENGTH=156