barSeed - Barley Seed Development Database

Probe CUST_2116_PI390587928

Source Contig U35_23009

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2116_PI390587928	Hv_44K_v2	CTTGGAGTGTTGAACAAACAGAGCGACATGAGTAGTATGTTTCACTTATTTTATGAAATC	889	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.862	2.071	0.942	1.208	0.591	0.655
Raw	4328.270	2769.667	1154.840	2099.023	413.801	484.918

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45093.1	1381	8e-25	1318 - 1377	100	60 / 60	plus
Harvest21	ABC16781	904	3e-25	30 - 89	100	60 / 60	minus	ABC16781
Harvest35	U35_23009	978	3e-25	890 - 949	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_23009 978 Hv_44K_v2
AACACCCTCCCGGCGGTGACCTTCGCGCTGGCGGCGGCGCTCAAGATGGAGCCCGTGGCG
GCCCTCGCCGGGAAGGCCAATGTGGGCGGCACGGCGCTCTGCGTTGCTGGCTCCATGCTG
ATGACCTTCTACAGGGGCGCCCTCATCAGGACTCTGGACTCTCCGATCCACTGGCCGTAC
GTGCAGCGCACCATGACCGCCGAGGCCGCGGCACACGCCGGCGGGCACGCCGCCGCCCTC
GGGGCGGCTCTGGTCATCGCCTCCAACGTTGCCTGGGCAGTCTGGTTCATCATTCAGAAG
AAGATGTCCAACACCTTCTCGTCTCCGTACACGACGACGGTGTTAATGGCGGCAATGGCC
AGCGTCCAGTGCAGCGTCATCGCGCTGGCTGCGGAGCGGAGGCTCTCGGCGTGGGCGCTG
GGGTTCGATATCAGGCTCATCGGCTCGCTCTACGCGGGGGTGGTGGCGTCAGGGATTGTG
ATCGCGGTGATGTCGTGGTGCATCCAGGTGCGCGGGCCGGTGTTCGTGTCCATGTTCAGC
CCCATGATGCTCATCATCGTCGCCGTCGTCGGCTGGGGCATCCTCGGCGAGAAGATACGC
GTCGGCAGCGTGATCGGCGCCGTGCTCATAGTCGTGGGGCTGTACACGGTGCTCTGGGGC
AAGGGAAGGGACATCGTTGCCGCCGAAACCGCGGAAGATGACGACGAGGAGATGATGAAA
ACCGGCGGCGGCGAAGCGAGCAACGGGGCCGTCGTCGTCGTCGATGGCGCGGCGGCCTCG
CGGCCATGCGCCGCTGCTGATCGTCATGAAGCAGCGGGCCGGACGTAGCATGGCACGAGA
TTTGCAGTGCAGTCTTAGCTGGTGTGATGGCCTGAGTTTATTATGCCATCTTGGAGTGTT
GAACAAACAGAGCGACATGAGTAGTATGTTTCACTTATTTTATGAAATCTATCTATCACC
TCAAAAAAAAAAAAAAAA

Homology of Contig U35_23009 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19240.1	359	1e-104	protein\|integral membrane protein DUF6 containing protein, expressed
Brachypodium v1_2	Bradi2g11420.1	397	8e-71
Arabidopsis v10	AT1G09380.1	374	3e-58	nodulin MtN21 /EamA-like transporter family protein \| chr1:3026351-3029322 REVERSE LENGTH=374