barSeed - Barley Seed Development Database

Probe CUST_21167_PI390587928

Source Contig U35_26846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21167_PI390587928	Hv_44K_v2	CAGATAGCAAGAAGCAGTATCAGCTTGATTTGGAGAAGATCCGCAAAGGAGAGGATACTC	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353650	3396	2e-24	2259 - 2318	100	60 / 60	plus	ABC11901
MLOC	MLOC_56958.1	3650	2e-24	2505 - 2564	100	60 / 60	plus	ABC11901
MLOC	MLOC_56958.2	3578	2e-24	2433 - 2492	100	60 / 60	plus	ABC11901
JLOC1	JLOC1_36864.3	3578	8e-25	2454 - 2513	100	60 / 60	plus
JLOC1	JLOC1_36864.2	3560	8e-25	2436 - 2495	100	60 / 60	plus
JLOC1	JLOC1_36864.1	3632	8e-25	2508 - 2567	100	60 / 60	plus
Harvest21	ABC26578	797	3e-25	738 - 797	100	60 / 60	plus
Harvest35	U35_26846	797	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_26846 797 Hv_44K_v2
GCCCATCGGGATGTCCCCTTCAATGTTGTCAAATGCTCTGAAGATCGCACCAATCGGCAA
GGATAACAGCTGGTCTAAATACGATCAAGTATTCTCAAACAGCAACCAGTCCGTCGGCGC
TGCATTTCAGCATTCACAGTCATACCAAGAACGTAAAAGTGAGCATATGAGCTCGAGTCC
TGGGACTTTAACAGGGCCCGAGTTTCTGTGGGGCAGCCCAAAGCCTTATCCAGAGCATTC
CCAATCCTCATCAATGTGGCGTCCACCCCCAGTTGGTCATGCAATGTCATCTAGTAGCCG
CCCTCAGGGTCAGGGCTTCCTGTATGGTAGTCGCCAGGCTTCGTTGTTTGGATCTTTGGA
TCAAAACCGTCATCATGTTGGGTCTGCCCCTTCAGGCGCTCCATTTGAGAGCCACTTTGG
ATTTTTGCCTGAATCGCCCGAGACATCGTTTATGAATCAAGTTAGGTTTGCAAATATGGG
GAACATCGGCGGTGCTAACCGAAACGGGGGAAGTCTCATGCTGAACATGGCTTCTCGTGC
TTCCCTCAATCCTGTTTCTGCTCTAAGTGGAAGCCTGACAGATAATAACTCTACTAACTT
CAGACCAATTCCATCGCCAAGGCTTGGGCAACCACCATTCTTTGGGAACACCACATATCA
AGGACCTGGTTATTATGGGCTCGACAGCTCCATTGAACGTGGCCGTAACCGCCGAGTTGA
CAGCAGCGCGTTCCAGGCAGATAGCAAGAAGCAGTATCAGCTTGATTTGGAGAAGATCCG
CAAAGGAGAGGATACTC

Homology of Contig U35_26846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48790.3	829	8e-144	protein\|AML1, putative, expressed
Brachypodium v1_2	Bradi1g52280.1	846	3e-159
Arabidopsis v10	None