barSeed - Barley Seed Development Database

Probe CUST_21166_PI390587928

Source Contig U35_26847

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21166_PI390587928	Hv_44K_v2	TACTCCATTCCAAGGGTTCTTGCCCCGATGCCACAAAAGTACGTGAGGTGCGCGAAAAAA	589	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.959	3.224	1.172	0.857	0.724	0.608
Raw	49.273	44.791	16.127	16.656	4.301	3.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38307.1	1451	2e-24	614 - 673	100	60 / 60	plus	ABC13277
MLOC	MLOC_38307.3	1520	2e-24	556 - 615	100	60 / 60	minus	ABC13277
JLOC1	JLOC1_24900.1	1493	8e-25	658 - 717	100	60 / 60	plus
Harvest21	ABC25347	677	3e-25	590 - 649	100	60 / 60	plus
Harvest35	U35_26847	677	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_26847 677 Hv_44K_v2
GATGGCGACCACTCCGCTCGCGACCGCCTCTCCCTATCCATTCCCCTCTGCGCTCTCCAA
AACCCAAAACCCCACCTCCACCTCCAAGCTCCCTCCTCCGCACTCCCTCACCCTCTCCCT
CCTCACCACCCCAGCACCCCTTCTCCTCCCCCGCAGGCAGGGCCGGCGGCAGCGTGACGT
CTCGGCGGCGTACGGTGACGGCGACATGGACGACGACTTCGGCGATGCGGGCGACTTCGA
CCTTGACGGAGACGACGGTGTGGGGGACGACGACGACCTCGATAACGAGCAGGACTACGA
CGTCGACTACGACCGCCTCCTCGCCCCCGTCAAGCCTCGGCCGCAGCTCTCCGGGGTTGG
CGGCGGAGCCGAGGAAGGGGAGGGGGATATCGCCATGGTAGCGGCCCAGAGCTTCGTGTC
CACTGGGGAGTCCGCCTCTGACACCGTCGTCGACTACACTGTCGACGAAGATGAGTTCCA
CAAGATTCGCCTGCTCCACTGCGACTTCTTCATCCGCAAGGTGCCCGACCCTGACCAAGA
CGTCTACGACTTCCGAGAGATGTATGTCACACCGCCTGACACCGACATCTACTCCATTCC
AAGGGTTCTTGCCCCGATGCCACAAAAGTACGTGAGGTGCGCGAAAAAAAACTTTGGCCG
CTACCATGTAAGTGAGC

Homology of Contig U35_26847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None