barSeed - Barley Seed Development Database

Probe CUST_21164_PI390587928

Source Contig U35_38820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21164_PI390587928	Hv_44K_v2	AGAAACTCGTTCTCGCCTACAGATGGCTAATGGACCAGCCCAACCTCGCGCGCCCCCTTC	388	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19825.1	1737	2e-24	1355 - 1414	100	60 / 60	minus	None
MLOC	MLOC_19825.2	2789	2e-24	2407 - 2466	100	60 / 60	minus	ABC32836
JLOC1	JLOC1_13738.2	2741	8e-25	276 - 335	100	60 / 60	plus
JLOC1	JLOC1_13738.1	1689	8e-25	276 - 335	100	60 / 60	plus
Harvest21	ABC34759	456	3e-25	389 - 448	100	60 / 60	plus
Harvest21	ABC28082	595	3e-25	384 - 443	100	60 / 60	plus
Harvest35	U35_38820	456	3e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_28952	595	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_38820 456 Hv_44K_v2
GCCGCCTCCCCCATTCCGGCCGAAGTAAACCAAACCAAATCCTCGCCTCGCCTCGCCACC
ATGGCCGACGGCGCCGGCAGCGGCGGCGGCGGGTCCCGCCTCAGCGCCCTCCCCAGCGAC
CTGCTCCGTCACATCATCACCTACCTCCCCATCACGGAAGCCGCCCGCGCCGCCACCCTC
GGCCGCGCCTGGCGCCACCTCTGGCGCTCCTACCCGCTCGTCCTCAAGGATGCCGACATC
CCCGAGCGCGCGCGCGACGCCGCAATCCCCCGAGTCCTCGCCGACCACCCGGGCCACTTC
CGCGCCGTCTTCCTCTTCGACTGCAGGCTCGCCTCACTGGACCGTGGGCTCCCCGACTGG
CCGCGCCTCCTCGCCGACAAGCGCACGGAGAAACTCGTTCTCGCCTACAGATGGCTAATG
GACCAGCCCAACCTCGCGCGCCCCCTTCCCGCCGAC

Homology of Contig U35_38820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None