- Probe CUST_21157_PI390587928
- Source Contig U35_14871
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_21157_PI390587928 | Hv_44K_v2 | GGTGCTGGAGAAGTACCGGTCCAAGGGAGAGTTCTACGTGTGCTCCAACATGAACAAGAA | 140 | GeneList: None MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.024 | 0.801 | 0.709 | 0.694 | 1.325 | 1.180 |
Raw | 4.244 | 3.875 | 3.221 | 5.408 | 3.154 | 3.089 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK366859 | 1582 | 2e-24 | 1246 - 1305 | 100 | 60 / 60 | plus | ABC02173 ABC43476 |
MLOC | AK361109 | 2147 | 2e-24 | 1260 - 1319 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_37664.1 | 1140 | 2e-24 | 932 - 991 | 100 | 60 / 60 | minus | None |
JLOC1 | JLOC1_24403.1 | 1242 | 8e-25 | 151 - 210 | 100 | 60 / 60 | plus | |
Harvest21 | ABC02254 | 424 | 3e-25 | 141 - 200 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14871 | 425 | 3e-25 | 141 - 200 | 100 | 60 / 60 | plus |
Contig Sequence (425 bp)
>U35_14871 425 Hv_44K_v2 GTCGTCTCCAACGCCGACGACTTCGGCGGCACCGGCTGGGGCGTCTCCGAGTTCAGCTGG GACATCAAGTACCCCGGCCTACAGATCCTCGCCTCCAAGCTGCTGATTGAGGAGAAGGAG CTGAGCTCGGAGTACCGGACGGTGCTGGAGAAGTACCGGTCCAAGGGAGAGTTCTACGTG TGCTCCAACATGAACAAGAACCCCGGCGGCGCCGCCCGCAACGCGCCGCGCACCCCGGCG GGGCTCATCTTCATCCGTCCATGGAACAACCTCCAGTACGTGACCAACGCCGTCTTCCTC CTGACCGTCCACTCGGACCACCTGGCGGCGCTCGGGGAGCCCCTCCGCTGCACCGTGGAC GAGGACGCCGACACCTCGGACACGGGCGGCGAGACGGCGGCGGACGTCGTGGTGGGGGCG GAGGA
Homology of Contig U35_14871 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi3g04080.1 | 557 | 8e-51 | |
Arabidopsis v10 | None |