barSeed - Barley Seed Development Database

Probe CUST_21155_PI390587928

Source Contig U35_14873

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21155_PI390587928	Hv_44K_v2	TATGCCTGATGTAATGTGCTTGTTGAGTACTCGTATATGATTGTGCTTATATATTGTCCT	989	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38561.4	2831	2e-24	2723 - 2782	100	60 / 60	plus	ABC02255 ABC02257 ABC40963
JLOC1	JLOC1_25081.2	1413	8e-25	1134 - 1193	100	60 / 60	plus
JLOC1	JLOC1_25081.1	1399	8e-25	1120 - 1179	100	60 / 60	plus
Harvest21	ABC02255	1061	3e-25	978 - 1037	100	60 / 60	plus	ABC02255
Harvest35	U35_14873	1066	3e-25	990 - 1049	100	60 / 60	plus

Contig Sequence (1066 bp)

>U35_14873 1066 Hv_44K_v2
GGGGTTTGGCTCGGGACATACGACACTGCTGAGGAGGCAGCCAGGGCATATGATGCTGAG
GCCCGCAAGATCCGTGGCAAGAAAGCCAAGGTCAATTTTCCTGAGGATGCTCCGACTGTT
CAGAAGTCTACCCTGAAGCCAACTGCTGCTAAATCAGCAAAGCTAGCTCCACCTCCGAAG
GCCTGCGAGGATCAGCCTTTCAATCATCTGAGCAGAGGAGACAATGATTTGTTCGCGATG
TTTGCCTTCAGTGACAAGAAGGTTCCTGCAAAGCCAACTGACAGTGTGGATTCCCTTCTT
CCAGTGAAACACCTTGCCCCCACCGAGGCATTCGGAATGAACATGCTCTCTGACCAGAGC
AGCAATTCATTTGGCTCCACTGACTTTGGGTGGGACGACGAGGCCATGACCCCGGACTAC
ACGTCCGTCTTCGTACCGAGTGCTGCTGCCATGCCGGCGTACGGCGAGCCCGCTTACCTG
CAAGGCGGAGCTCCAAAGAGAATGAGGAACAACTTTGGCGTAGCTGTGCTGCCTCAGGGA
AATGGTGCACAAGACATCCCTGCTTTTGACAATGAGGTGAAGTACTCGTTGCCCTACGTT
GAGAGCAGCTCGGACGGATCTATGGACAACCTTTTGCTGAATGGTGCGATGCAGGATGGG
GCAAGCAGTGGGGATCTCTGGAGCCTCGATGAGCTGTTCATGGCAGCTGGTGGTTATTGA
TGGTTCTTGTCAATGTGGTCTGCGGACAGCACAAATGTCCCTTGCATGTGGGCAAGATGA
AGAATTGGTGGTGCATGTGGCCAAGATGAAAGAAGGATCGGTGGCTTCTGCTACGTTCTG
TAGCGGATGAAACCATAGTTATGCTAAAGACTGTATGCTGCTAGCAGTGGGAACCGTATG
GTCATGTTTATATTCTGTTGTTGTATGTCGTCTCTATATAATGATTGGGTGCATGTTGGA
GGCTGGAGTTTAATAAACACCTTGGGTCATATGCCTGATGTAATGTGCTTGTTGAGTACT
CGTATATGATTGTGCTTATATATTGTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26420.4	286	1e-83	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi4g31040.1	402	8e-86
Arabidopsis v10	None