barSeed - Barley Seed Development Database

Probe CUST_21152_PI390587928

Source Contig U35_14877

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21152_PI390587928	Hv_44K_v2	AATGATTGGGTGCATGTTGGAGGCTGGAGTTTAATAAACACCTTGGGTCATATGAAAAAA	1503	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.340	0.555	1.162	1.524	1.115	1.151
Raw	8352.780	21508.297	39993.067	77885.967	20989.800	23508.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38561.4	2831	3e-21	2673 - 2726	100	54 / 54	plus	ABC02255 ABC02257 ABC40963
MLOC	MLOC_38561.1	1250	3e-21	1156 - 1209	100	54 / 54	plus	ABC02255 ABC02257 ABC40963
JLOC1	JLOC1_25081.2	1413	2e-21	1084 - 1137	100	54 / 54	plus
JLOC1	JLOC1_25081.1	1399	2e-21	1070 - 1123	100	54 / 54	plus
Harvest21	ABC02257	1533	1e-23	1441 - 1500	98	59 / 60	plus	ABC02257
Harvest21	ABC02255	1061	6e-22	928 - 981	100	54 / 54	plus	ABC02255
Harvest35	U35_14877	1645	3e-25	1504 - 1563	100	60 / 60	plus
Harvest35	U35_14873	1066	6e-22	940 - 993	100	54 / 54	plus

Contig Sequence (1645 bp)

>U35_14877 1645 Hv_44K_v2
ATCGAGTCGGCGGCCTACTGATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGC
ATGCTTAACACATGCAAGTATCGCCACCACCCTCCATCCCCCACTCCGCCCGCAAAGCTC
GCCTCCTCCATCACTGTGCCGCCCGTGCTCGCCTCTCCCGGCAGGCACCGATCTAGCCCT
CCCTCCCTTGATCCACAGCTCGCCATGTGCGGCGGAGCCATCCTCGCGGGATTCATCCCG
CCGTCGGCGGCCGCGGCGGCGGCCAAGGCAGCGGCGACGGCCAAGAAGAAGCAGCAGCAG
CGCAGCGTGACGGCAGACTCGCTCTGGACGGGCCTGCGGAAAAAGGCGGACGAGGAGGAC
TTCGAGGCCGACTTCCGCGACTTCGAGCGGGACTCCAGCGAGGAGGAGGACGACGAGGTC
GAGGAGGTCCCCCCTCCGCCGGCGCCGGCGACGGCCGGGTTCGCCTTCGCCGCCGCGGCC
GAGGTCGCGCTCAGGGCCCCTGCCCGCCGAGATGCTGCTGTTCAACATGATGGACCTGCT
GCCAAACAAGTAAAGCGCGTTCGGAAGAATCAGTACAGAGGGATCCGCCAGCGTCCCTGG
GGGAAATGGGCAGCTGAAATCCGTGACCCTAGCAAGGGTGTCCGGGTTTGGCTCGGGACA
TACGACACTGCTGAGGAGGCAGCCAGGGCATATGATGCTGAGGCCCGCAAGATCCGTGGC
AAGAAAGCCAAGGTCAATTTTCCTGAGGATGCTCCGACTGTTCAGAAGTCTACCCTGAAG
CCAACTGCTGCTAAATCAGCAAAGCTAGCTCCACCTCCGAAGGCCTGCGAGGATCAGCCT
TTCAATCATCTGAGCAGAGGAGACAATGATTTGTTCGCGATGTTTGCCTTCAGTGACAAG
AAGGTTCCTGCAAAGCCAACTGACAGTGTGGATTCCCTTCTTCCAGTGAAACACCTTGCC
CCCACCGAGGCATTCGGAATGAACATGCTCTCTGACCAGAGCAGCAATTCATTTGGCTCC
ACTGACTTTGGGTGGGACGACGAGGCCATGACCCCGGACTACACGTCCGTCTTCGTACCG
AGTGCTGCTGCCATGCCGGCGTACGGCGAGCCCGCTTACCTGCAAGGCGGAGCTCCAAAG
AGAATGAGGAACAACTTTGGCGTAGCTGTGCTGCCTCAGGGAAATGGTGCACAAGACATC
CCTGCTTTTGACAATGAGGATGGGGCAAGCAGTGGGGATCTCTGGAGCCTCGATGAGCTG
TTCATGGCAGCTGGTGGTTATTGATGGTTCTTGTCAATGTGGTCTGCGGACAGCACAAAT
GTCCCTTGCATGTGGGCAAGATGAAGAATTGGTGGTGCATGTGGCCAAGATGAAAGAAGG
ATCGGTGGCTTCTGCTACGTTCTGTAGCGGATGAAACCATAGTTATGCTAAAGACTGTAT
GCTGCTAGCAGTGGGAACCGTATGGTCATGTTTATATTCTGTTGTTGTATGTCGTCTCTA
TATAATGATTGGGTGCATGTTGGAGGCTGGAGTTTAATAAACACCTTGGGTCATATGAAA
AAAAAAAAAAAAAAATGTGCTTGTTGAGTACTCGTATATGATTGTGCTTATATATTGTCC
TTCTGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26420.4	286	3e-93	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi4g31040.1	402	2e-94
Arabidopsis v10	None