barSeed - Barley Seed Development Database

Probe CUST_21139_PI390587928

Source Contig U35_38832

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21139_PI390587928	Hv_44K_v2	AATGCCATCTTTGCTTTGTTCAGGCTCTGATGGTGCAAAGCTTGTGGCTACAAAGGCAAA	400	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68036.1	4051	2e-24	199 - 258	100	60 / 60	plus	ABC18979 ABC42436
Harvest21	ABC34772	510	3e-25	401 - 460	100	60 / 60	plus
Harvest35	U35_38832	510	3e-25	401 - 460	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_38832 510 Hv_44K_v2
GGTCCAGTTGCGAGATGGCGGCGGCGGTGGACCTGGAGGACGCGTTCGGCGCGGTCTTCG
GCGAAGCCAAGGCGGAGGGCCACCCCACCGCGCGCCCCATCCTCTTCCGCGCCCACGCCC
GCTCCGCCGCCGCCATCCGCGTCGTCGCCACCGACTGCCACTCCCTCGCCTGGGACTGCT
CCCTCTCTGTCTCCGACCTCGACGACCTCAGAGACGATGTTGGAATCGGGGGCTCCTGGG
CCGACTTCCTGGATTACCTCAAGTCCTCCTTGTCCTCCGGCGAGGTGAAGCTGCTCTTCG
CCGCCGACCAACTCCGCAAGTCAACCGGCATGCCACCCACCTTCCCGCTTCAAATCCCCC
AAATGTTCATTTCACTTGTGCCAAACATCACATGATAGATAATGCCATCTTTGCTTTGTT
CAGGCTCTGATGGTGCAAAGCTTGTGGCTACAAAGGCAAAGGGCCTGCCTCGCATCACCA
TTTCTCTCCATACTGTTACTGGTGCTGGGA

Homology of Contig U35_38832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None