barSeed - Barley Seed Development Database

Probe CUST_21134_PI390587928

Source Contig U35_38837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21134_PI390587928	Hv_44K_v2	ACTGATATGCACATGAGAGATTTGGTGGAGAGAATCAGATTAATGGAGGCGGACATACGG	560	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.243	1.016	1.646	1.233	0.642	0.527
Raw	73.680	84.961	131.545	141.793	28.391	25.464

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361332	2003	2e-24	573 - 632	100	60 / 60	plus	ABC22036
MLOC	MLOC_14423.3	881	2e-24	478 - 537	100	60 / 60	minus	None
MLOC	MLOC_14423.2	897	2e-24	478 - 537	100	60 / 60	minus	None
MLOC	MLOC_14423.4	1094	2e-24	478 - 537	100	60 / 60	minus	None
MLOC	MLOC_14423.5	1113	2e-24	478 - 537	100	60 / 60	minus	None
MLOC	MLOC_14423.6	1104	2e-24	478 - 537	100	60 / 60	minus	None
MLOC	MLOC_14423.1	1602	2e-24	478 - 537	100	60 / 60	minus	None
JLOC1	JLOC1_9853.4	1037	8e-25	501 - 560	100	60 / 60	plus
JLOC1	JLOC1_9853.3	1041	8e-25	505 - 564	100	60 / 60	plus
JLOC1	JLOC1_9853.2	1032	8e-25	496 - 555	100	60 / 60	plus
JLOC1	JLOC1_9853.1	1040	8e-25	504 - 563	100	60 / 60	plus
Harvest21	ABC34780	677	3e-25	561 - 620	100	60 / 60	plus
Harvest21	ABC12830	1410	3e-25	786 - 845	100	60 / 60	plus
Harvest35	U35_38837	677	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_5831	1411	3e-25	786 - 845	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_38837 677 Hv_44K_v2
GGCTGCAGGCGAGCGCGACAGCTAGGGTTCCTAGCCGCCGCCCCACTGCCGGCCCGCCGC
CGCGGCGCGCCCAGCCGGCCGGAGCCTCCGCTGCCCCGCCTTCGGTCAATATCCCAGCAG
CGCATCCCTCCGTCAAGCAGCCGCTCCCACCAGCGGCGCCTCCCTCCCTGGAGCAGGCGC
TCCCGCCCGGAGCTACGCCGGCGACCAGTCCATAGGCAGGGCATCTACATTGTCAATTGG
AGGGGCTTGGAACTGCTTCGGCATCAACAGTAGAGCAAACACGAAGGATAATGGCTCATC
GTGGACACCTAGATGGACTAATGCGCCATGGTGCATTCTCTGGAGCCGGCCTCTCTGGTC
GCCAACCTTTGGAGCCTTCTCCTGCCACCATACTGGAGATCCTGGAAAACAAGCTTGCCG
TGCAGACCGCAGAGGCAGAAAAACTTATCAGAGAAAATCAGCGATTGGCAGATAGCCATG
CGGCCTTGAGAAAGGATATTATTGGCACTGAGACAGAAATGCAAATGATTCGCACCCACC
TAGGTGATGTCCAGGTAGAGACTGATATGCACATGAGAGATTTGGTGGAGAGAATCAGAT
TAATGGAGGCGGACATACGGGCTGGTGAGGCAGTGATGAAGGAACTTCACCAAGTGCATA
TGGAGGCAAAGCGACTT

Homology of Contig U35_38837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40300.1	407	5e-56	protein\|transglutaminase, putative, expressed
Brachypodium v1_2	Bradi5g13480.1	421	1e-62
Arabidopsis v10	None