barSeed - Barley Seed Development Database

Probe CUST_21128_PI390587928

Source Contig U35_14885

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21128_PI390587928	Hv_44K_v2	TGAGCTGAAGTTGAAGAAGATGAGCAACTCCGCGTGAGCATGCTTACACTTTCTTGTAAA	655	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.049	1.386	1.085	0.717	0.237	0.178
Raw	2544.743	2691.417	1861.240	1936.797	226.865	184.991

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34049.1	856	3e-24	701 - 759	100	59 / 59	plus
Harvest21	ABC01370	708	2e-21	656 - 708	100	53 / 53	plus	ABC01370
Harvest35	U35_14885	729	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_14885 729 Hv_44K_v2
GCCCTCCACTCCTCTCCCCCGCCGCCACCCCGTCCCTGCATCCTCTCCCACGCCAAGACC
GCCGCCGCCGCCGCCGCCGCTCGTCAAGATGGTGCTCCAGAACGACATCGACCTCCTCAA
CCCGCCGGCGGAGCTCGAGAAGCTCAAGCACAAGAAGAAGCGCCTCGTGCAGTCCCCCAA
CTCGTTCTTCATGGATGTCAAGTGCCAGGGCTGCTTCAACATAACGACTGTGTTCAGCCA
CTCTCAGACCGTGGTGGTGTGCCCGGGCTGCCAGACGGTGCTCTGCCAACCCACCGGTGG
AAAGGCGAGGCTCACCGAGGGATGCTCCTTCCGCCGGAAGGGTGACTAAGTTGCACGCCT
GTTTATGGGAAAATGAAGCCCCACTGAACGTTACTTTTGAAGTACTCCTAGTTATCCCCG
ATGTGTACTGGTCAAATTTTGTTAATTATGCTTGCCCGTTTGCCAGCCTGAACGTTGTAG
CAACTTGTTCTATGTCATGCACTTCCTTGAATCGCCTGTTGTTGGTTCTTCTGTTTAAAA
AAAAAAATGGCAAGTCCGTTTAGTTTGTTGCTGCATTCTCTTCAGTGTTCAAAATACGGT
CTGTATTCTGTCATGTCCTGGGTCTCGATCAGATATCATGGATTTATTCTGTCCTTGAGC
TGAAGTTGAAGAAGATGAGCAACTCCGCGTGAGCATGCTTACACTTTCTTGTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None