barSeed - Barley Seed Development Database

Probe CUST_21126_PI390587928

Source Contig U35_14887

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21126_PI390587928	Hv_44K_v2	TGGGTGTTGCTGCTTGTATTTTGAAGCATGTTCCTGTCTTAACAGTATCTTGGACATAAA	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67049.1	882	6e-24	766 - 824	100	59 / 59	plus	ABC01661 ABC39076
JLOC1	JLOC1_44228.1	974	3e-24	793 - 851	100	59 / 59	plus
Harvest21	ABC01656	704	1e-23	638 - 697	98	59 / 60	plus
Harvest35	U35_14887	703	3e-25	633 - 692	100	60 / 60	plus
Harvest35	U35_50790	396	1e-24	89 - 147	100	59 / 59	minus

Contig Sequence (703 bp)

>U35_14887 703 Hv_44K_v2
CCGCACGCGGGGCCGTCTCCACTCCCCCCTCTCTCCCCCTCCGCCGCCGGCGCAGCGTCA
TCCCCGCGCGCGACTCCGATGGCCAGCAAGTGGGTCCGTCCCGAGGTGTACCCGCTCTTC
GCGGCGACGGGCGTCGCCATCGGCATCTGCGCCTTCAGCCTCCTCCGCAACATCACCGGC
AACCCAGAAGTCAGGGTCAGCAAGATGGGGAGGGCAGCAGGAGTGCTTGAGAACCATGAG
GAGGGCAGGCGCTACGCCGAGCACGGCCTCAGAGCCTACGTGCAGGACAAGACCCCCGAG
ATCATGCCAGGAATCAACAAGTTCTTCACCAGCCCGAAATGAAGCACTTTAGACTGTCTG
TCTGTGACTCGCTATTAGCAACTGTTGTGGTCAAGTGCAAACCTATTTCAAGCATTCAGT
AATGTTGTTGCGTCCATAATTCAGAGGATATCATCCAGTACCTCTTAATGAAAGAACCAT
GTGATGTTTGTTGGCTTGCTATATATGTGATGGTTGGTGGCTATAAAAAAAATAAAACAT
AGAGATCGTTCAAAAAAAAAAAAAAAAATGTTTGTGCTTAGTTGTTTTGTTGCGCAGGCC
TCAGTGGTAGCTCGTTGATGTGTGTGCACATTTGGGTGTTGCTGCTTGTATTTTGAAGCA
TGTTCCTGTCTTAACAGTATCTTGGACATAAAAAAAAAAAAAA

Homology of Contig U35_14887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g44510.1	89	1e-52
Arabidopsis v10	None