barSeed - Barley Seed Development Database

Probe CUST_21122_PI390587928

Source Contig U35_15505

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21122_PI390587928	Hv_44K_v2	ATTAACCCTGCATTCCCATTGCAAAATCATTTTCGACACAATCTTTTCGTCGTGTATTCT	1629	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373554	1715	2e-24	1555 - 1614	100	60 / 60	plus	ABC03303 ABC03305
MLOC	MLOC_49293.1	335	2e-24	102 - 161	100	60 / 60	minus	ABC03305
JLOC1	JLOC1_31558.1	287	8e-25	109 - 168	100	60 / 60	plus
Harvest21	ABC03305	1749	3e-25	1630 - 1689	100	60 / 60	plus	ABC03305
Harvest35	U35_15505	1749	3e-25	1630 - 1689	100	60 / 60	plus

Contig Sequence (1749 bp)

>U35_15505 1749 Hv_44K_v2
GTGCAGAGGCGGCGGCGCGCGAGGTGGGAAAGATGTCGAGGGCCGTCAGGATCCGCGGCG
ACGAGGTGGGAAAGACGTCGAGGGCCAGGAGGATCCGCGGCGACGAGCTGGAAACGGAGC
GGGGAGCAAGGGCGAAGAAGCGAAGCCTGGCAGAGGTTCACTCCACGAGCCCTAGATCTC
CCGGGCAGCTAGCTGTTCGGAGTTCCCATTCCCACCCAGAGATACTGTTCGCGATCTTCG
AGCCCGACGAAGCCCAATCCGGAGCAAAACAAGGTCGTGTGCGCGATGTGGTCGAGTCCG
CCATGGAGGAATCCTCCGATCCACCCAAGCCTCCGCCCTACGAACCCTACATCCCAGACG
AACTAGCTGCAGACCCGGCCATACTCGCCGCCTTCAAGCATGCCGAGGCTAAATACGAAG
AAGAAGAAGTTCGTCTAGCTCACCTGTTCACTATGGACCACTACTGGCACAAACCATCTT
CCTGCTTGCGCATAGACCCTCGTCTCCTTCCCATACGGGAACTCGCAAGAGATGCAGTAC
TTCTTGCTGCTAAATCTGTCATTTTGCTCTCATCCTTTCTCGAGAATCAACCGCTGAATA
AATGCTGTGGCTTGTGGTTTCAAAGGGATGACCAGAGAAAAACCGCCCTTGTTTTGACGT
CTGCTCATCTCACTCGTAAAAAGGATCCCAACCAGTGGAAGGGGCAGTGGACAGGCGAAT
ATCATCATAATGCTAAGGTCATTGTTCATTTGCTGGACAACACAACTACACCAGGCCAGC
TCATCTATCTTCAGGAGCATTATGAATTTGCTATTTATGAGGTTCAAGTGGATAAACCAG
TTCATCTACCCACTTTTAATGGCCGTGTTCATTCTGGTCAAGATGTTTTCCGCCTTGGAA
GAGACGCAAATCTGGATATAAAGATAACACATGGTAATTTGGCCTATGACATTCCATCTC
GGCATGAGAGATGCCACTACATGTATTTTCTCCGTGATGCATCTACTCTCAAACTGTTAC
ATGATGATGGAGGGCCCATCATTGATTTGGAAGGGAAGGTTGTGGGTCTAGTTAACAACC
AAATTAATGAGACGTTTGTACCTTCGTCGATATTGCATAAGTGCTTGGATTTTTGGAGAA
GGTTCAATTGTATGCCTTGCCTCCACCTTGGAATGACATTTAGTCCAATCAAGTTTTTAG
ATCCTATTTGTATTGAGAGGATGGCTCGTAAGCATAACATCGACTCTGGTCTTATTGTCG
AGCAGGTGTCAAAAGAATCACATGCTGAGAAAATTGGAATTCGCAAGGGTGATGTCATTG
AAAGCTTTAACGGAAAGCACATTTCTACTACAATTGAGTTGGAAAGCATGTTGATAGACA
TATGCTGGGATCATTTTGATCAAGAAAAGAAATTGAATACTGAAAAAGATGTTTCGTTGA
AAATATTGGATGCTACCAAACTTTGTCTGAGAACTAGAAACTTGACTGCAATTGTATCGG
ATCGCGGAGAGGACATTGTAAAAGGTGCTTACCCTATCACGAGTGAAGAAGCCAATCTTA
TGATTCTTGATTCTTGAGCTGTGCCTGAGGCACCTGCCCACTGCTGGCCTTCATGGATGA
GTCAACCGTATTAACCCTGCATTCCCATTGCAAAATCATTTTCGACACAATCTTTTCGTC
GTGTATTCTTAGACAAAAACTTGAAATTATGACTGTCTTTGGGCTGTAGAAGCAAAGCTT
AAGCTTAGA

Homology of Contig U35_15505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05330.1	545	4e-91	protein\|expressed protein
Brachypodium v1_2	Bradi2g17926.1	481	3e-180
Arabidopsis v10	None