barSeed - Barley Seed Development Database

Probe CUST_21116_PI390587928

Source Contig U35_15511

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21116_PI390587928	Hv_44K_v2	TTGATGCTGTGTATGGCTCTAATCCCCCTCGAAAGTAAAACGCCTACTGTTTCTCTGAAA	1152	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.846	1.127	1.705	1.619	0.632	0.591
Raw	3125.017	6375.713	8742.787	12937.717	1805.333	1802.187

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16521.1	855	9e-22	760 - 817	98	58 / 59	plus	ABC04432 ABC40409
JLOC1	JLOC1_11376.2	1402	5e-22	1253 - 1310	98	58 / 59	plus
JLOC1	JLOC1_11376.1	909	5e-22	760 - 817	98	58 / 59	plus
Harvest21	ABC04432	1221	5e-23	1137 - 1195	98	59 / 60	plus	ABC04432
Harvest35	U35_15511	1226	3e-25	1153 - 1212	100	60 / 60	plus

Contig Sequence (1226 bp)

>U35_15511 1226 Hv_44K_v2
TGTTGGCCACCCCTCCCCAAACCCCAGCGCCAGAACCTTATCCCCAGTCGAGTCTTATCC
CCCCTCTGCAATGGCGGCCACCCTCTTCTCCACCGCGCTCTCGCACCACTTCATCCCCCT
CCCCTCCGCCGCCAGGCCCGCCGCGGCCGCCTCCGCCTCCTTCACCTGCGGCCCGCTGCG
CGCCGTGTCGGCGCTGCTGGCGCCGCGGAGGCGGCTGCTGCTGCCCGTGGCCGTGGCCGT
GTCGTCCGAGTTCGACACGGAGGACGCCGAGGGGGAGCAGAGCGAGGGCGAGGGCGGGGG
CGACTCCGAGGCCGAGTACTCCGAGGACCTCAAGGTCTTCGTCGGCAACCTCCCCTTCAC
CGTCGACAGCGCGCAGCTCGCCGGGCTCTTCGAGCAGGCCGGCTCCGTCGAGATGGTCGA
GGTTGTATACGATAGAATGACCGGACGGAGCCGTGGATTTGGATTCGTCACAATGGGTTC
AGTTGAGGAAGTTGCTGCCGCCGTCGAGCAATTCAATGGCTATACCTTCCAAGGAAGACC
TTTGAGGGTTAACTCCGGACCACCACCACCCAGAGATGAATTCGCACCCAGAACACCGAG
GGCCATGGGCGGCGGTGGTGGTGGCGGCAGCTTTGATTCAGCCAACAAGCTCTACGTCGG
GAACCTATCCTGGGGTGTTGACAACTCAACGCTTGAGAACCTGTTCAGCGAACAAGGAAA
GGTGCTTGATGCTAAGGTCATCTATGACCGGGACAGCGGCAGGTCGAGGGGCTTTGGCTT
CGTCACCTATGGCTCTGCTGATGAGGTCAACAATGCGATCTCAAACCTCGACGGAGTGGA
CCTTGACGGCAGGCAGATCCGGGTTACCGTGGCAGAGTCGAAGCCGAGGGAGCAAAGGCG
GTTTTAAGATATCCTGACTCTGGTTAGAGATTAATCACGTGTTGCGTAAGTGTTAGTTTG
TAGTTTCTACTACTATTTTCTCGCGGTTGATGAGAGAGACTGGGAAGTGAATTTGTATAC
CGGAAGATTTTTGTCAGCCGTGCAACTCGTTGCGCCTCTTGATAGAAAAAGTAGAAATTT
TGTCAAAGTCATTCTATATGCTTAGCAGCATAGATGATGTACGATACCATTAAAAACCCT
TTTGAATGTTTGTTGATGCTGTGTATGGCTCTAATCCCCCTCGAAAGTAAAACGCCTACT
GTTTCTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43810.1	265	1e-109	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g20440.1	276	5e-121
Arabidopsis v10	AT2G37220.1	289	8e-81	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:15634980-15636331 REVERSE LENGTH=289