barSeed - Barley Seed Development Database

Probe CUST_21115_PI390587928

Source Contig U35_15512

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21115_PI390587928	Hv_44K_v2	TGAGCTCTGGAGCAACTTTGGCTACAACACCTATGTTTTGTGCATTGTTTTTCACATAAA	1078	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.700	1.595	1.226	0.792	0.272	0.274
Raw	2538.540	3733.780	2506.907	2513.563	307.946	336.469

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54485.3	1292	7e-23	1176 - 1235	98	59 / 60	plus	ABC03506 ABC03507
MLOC	MLOC_54485.4	1369	7e-23	1253 - 1312	98	59 / 60	plus	ABC03506 ABC03507
JLOC1	JLOC1_35069.1	1241	4e-23	1158 - 1217	98	59 / 60	plus
Harvest21	ABC03507	1295	3e-25	1200 - 1259	100	60 / 60	plus	ABC03507
Harvest35	U35_15512	1174	3e-25	1079 - 1138	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_15512 1174 Hv_44K_v2
CTCGGAAGTCGCGCTCCCAAACCCTAGCTCCCACCGCAGCGGCCACCGCATCCCTCCCCT
CCCGGTGAGTGCTTGTTGCTGCAGACGAGAAGCGGCTGAGGCGAAGAAGAGGAATCGACC
ATGGCGACCCGTATCCAGTTTGAGAACAACTGTGAAGTTGGTGTTTTCTCCAAGCTCACA
AATGCCTACTGTCTGGTTGCAATTGGAGGATCAGAGAATTTCTACAGTACATTTGAGTCT
GAGCTTGCAGATGTCATTCCTGTGGTCAAGACCTCTATCGGTGGCACTAGAATAATTGGC
CGCCTCTGTGTTGGAAACAAGAATGGACTTCTCTTGCCACACACAACCACTGATCAAGAG
CTTCAGCATCTGAGGAACTGCATACCTGATCAAGTGGTTGTTCAGCGCATCGATGAAAGG
CTGTCTGCCCTTGGCAATTGCATATCCTGCAATGACCATGTTGCGCTCACACACCCTGAC
CTTGACAAGGCAACTGAGGAGCTTATTGCAGATGTGCTTGGGGTTGAGGTATTCCGTCAG
ACAATTGCAGGAAATATCCTTGTTGGGAGCTACTGTGCATTCTCTAACAGGGGTGGACTG
GTCCATCCTCACACATCCATTGAAGATCTTGATGAGCTGTCCACACTCCTCCAAGTCCCT
CTTGTCGCTGGAACCGTGAACCGTGGTAGCGAGGTCATTGCTGCGGGCATGACGGTGAAC
GACTGGACTGCCTTCTGTGGCTCAGACACAACCGCTACCGAGCTCTCCGTCATCGAGAGC
GTCTTCAAGTTGAGAGAAGGCCAGCCCACGGCGATCGTCGATGACATGAGGAAGTCGCTG
ATTGACAGCTACGTCTAAATGATCAAAGGGCATGGGATGTGGTTCTTGAACGGTACTTTT
GGTTGACAGTAGCAAAAAAACATGCCTGTCTAAGCTCTTACTTCTGGTGTACCTTCGTCT
TCCGAATTTGGAATTACAAACTTGTGCTTTGTCCTGGTAAAGCTTACGGTATTTGAAGGT
GTGCACTTACGCTATGTGATATTAGTATCTTAGCCTGATAGTATTTGGGTTTTATGTTTG
AGCTCTGGAGCAACTTTGGCTACAACACCTATGTTTTGTGCATTGTTTTTCACATAAAAA
AAAAGTCTTGCTCTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15512 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44620.2	246	8e-170	protein\|eukaryotic translation initiation factor 6, putative, expressed
Brachypodium v1_2	Bradi1g19960.1	246	5e-173
Arabidopsis v10	AT3G55620.1	245	7e-159	\| Symbols: emb1624 \| Translation initiation factor IF6 \| chr3:20634581-20636312 FORWARD LENGTH=245