barSeed - Barley Seed Development Database

Probe CUST_21113_PI390587928

Source Contig U35_15514

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21113_PI390587928	Hv_44K_v2	GTATTCCGTCAGACAATTGCAGGAAATATCCTTGTTGGGAGCTACTGTGCATTCTCTAAC	649	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.871	1.107	2.056	1.922	0.797	0.762
Raw	2662.300	5251.757	8512.007	12878.793	1836.680	1914.990

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250868.1	1113	2e-24	541 - 600	100	60 / 60	plus	ABC03506 ABC03507
MLOC	MLOC_54485.3	1292	2e-24	626 - 685	100	60 / 60	plus	ABC03506 ABC03507
MLOC	MLOC_54485.4	1369	2e-24	703 - 762	100	60 / 60	plus	ABC03506 ABC03507
MLOC	MLOC_54485.1	1181	2e-24	716 - 775	100	60 / 60	plus	ABC03506 ABC03507
JLOC1	JLOC1_35069.1	1241	8e-25	608 - 667	100	60 / 60	plus
Harvest21	ABC03507	1295	3e-25	650 - 709	100	60 / 60	plus	ABC03507
Harvest21	ABC03505	1091	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_15514	794	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_15512	1174	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_15514 794 Hv_44K_v2
CGGCACGGGCGGCTCTCCCCTCGTTCCCCGTTCTCTCGGAAGTCGCGCTCCCAAACCCTA
GCTCCCACCGCAGCGGCCACCGCATCCCTCCCCTCCCGGTTCGCCGCCTGGTTCCCTCTC
CCGTACCAGAGATCCCCCTCCTCTATCCGGTTGCTCGCTGAATCATCCGCGCGTTTGATC
TGCAGGTGAGTGCTTGTTGCTGCAGACGAGAAGCGGCTGAGGCGAAGAAGAGGAATCGAC
CATGGCGACCCGTATCCAGTTTGAGAACAACTGTGAAGTTGGTGTTTTCTCCAAGCTCAC
AAATGCCTACTGTCTGGTTGCAATTGGAGGATCAGAGAATTTCTACAGTACATTTGAGTC
TGAGCTTGCAGATGTCATTCCTGTGGTCAAGACCTCTATCGGTGGCACTAGAATAATTGG
CCGCCTCTGTGTTGGAAACAAGAATGGACTTCTCTTGCCACACACAACCACTGATCAAGA
GCTTCAGCATCTGAGGAACTGCATACCTGATCAAGTGGTTGTTCAGCGCATCGATGAAAG
GCTGTCTGCCCTTGGCAATTGCATATCCTGCAATGACCATGTTGCGCTCACACACCCTGA
CCTTGACAAGGCAACTGAGGAGCTTATTGCAGATGTGCTTGGGGTTGAGGTATTCCGTCA
GACAATTGCAGGAAATATCCTTGTTGGGAGCTACTGTGCATTCTCTAACAGGGGTGGACT
GGTCCATCCTCACACATCCATTGAAGATCTTGATGAGCTGTCCACACTCCTCCAAGTCCC
TCTTGTCGCTGGAA

Homology of Contig U35_15514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44620.2	246	6e-126	protein\|eukaryotic translation initiation factor 6, putative, expressed
Brachypodium v1_2	Bradi1g19960.1	246	2e-128
Arabidopsis v10	AT3G55620.1	245	2e-118	\| Symbols: emb1624 \| Translation initiation factor IF6 \| chr3:20634581-20636312 FORWARD LENGTH=245