barSeed - Barley Seed Development Database

Probe CUST_21110_PI390587928

Source Contig U35_15517

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21110_PI390587928	Hv_44K_v2	CTGTGATTTCAAACCCTGAATCTACCCAGTGTAATGCAGGCCAATAAAGGAAAACTTTAA	1460	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.190	1.405	1.187	0.970	0.386	0.425
Raw	413.756	756.714	550.892	725.933	99.817	119.164

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03724	1530	3e-25	1471 - 1530	100	60 / 60	plus	ABC03724
Harvest35	U35_15517	1520	3e-25	1461 - 1520	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_15517 1520 Hv_44K_v2
AAACCAAGTCTCGCACGCCATCTTGGCCAGCGCTCTCTCCTCCCCCACCGCGCCGCCGAG
CTCCGCCTCCGGCCGACGCAAGCAGGCCACCTCGGACGAATTCTTCTTCCCCTACTCCTC
GTATCTACCGGGATGGCGTCGGGTGGAGATCTTCCATCCGGGTTCACTGATGAGAGCAAA
AGTAAAAAAACAGAAGGATCATCCAACGAAGGTCAAGGTGTTCCTCCAGCTGCCGCTGCA
GGCTTGTCGGGTCCTTTCGATTTTTCTTCTATGCAAAGTTTGCTCAATGATCCATCTATA
AAGGAGATGGCAGATCAGATTGCAAGGGACCCTGCATTCAATCAGATGGCTGAGCAGCTA
CAGAAAGGTGCTCAGGGTGCAGGAGAACAGGGCATGCCTCCATTGGATCCTCATCAATAC
ATTGAAAAAATGCAAAGGGTCATGGAAAACCCTCAATTCATGACAATGGCAGAACGCCTC
GGGACTGCTCTTATGCAGGATCCTGCTATGTCCAGTATGCTGGAAAACTTGACCAGTCCA
ACACATAAGGAGGAGCTTGAAGAGCGCATGTCTCGTATTAAGGAAGATCCAGCTTTGAAG
CCAATTCTTGATGAGTTAGAGAATGGTGGTCCTGCTGCAATGATAAAGTATTGGAATGAC
CCTGAAACTCTTCAAAAGATTGGCCAGGCAATGGGAACCACCATGCCATTTGGCACTGTC
TCTACTGCTGAGCCTTCTGGTACTGAAGAAACTGAAGAAGAAGGTGAAGATGAAGATGAG
TCCATTGTCCACCACACTGCCAGTGTTGGTGATGGTGAGGGTCTAAAGAAGGCTCTAGAT
GGTGGAGCAGACAAGGATGAAGAAGACTCTGAGGGAAGAAGGGCCTTGCACTTTGCATGT
GGATATGGTGAGTTCAAGTGTGCGGAAATCCTCCTTGAGGCTGGTGCTGCAGTAGATGCT
ATGGATAAGAACAAGAACACCCCACTGCATTACGCTGCTGGCTATGGCCGGAAAGAATGT
GTGGATCTTCTGTTGAAGCACGGCGCTGCTGTCACTCTCCAAAACATGGATGGGAAGACG
CCCATCGATGTCGCCAAGCTCAACAACCAGGATGAGGTCCTCAAGCTGCTCGAGAAGGAC
GTGTTCCTGTAAATCGCTTCACTTGGCTCCCATGAAGAGACATGGCCGTCATCATGTTTT
ACATCGCTTTGGCATTGGTTGGATAGTCATACTCGAATCGGCATTTTATTCGTTGTGTAA
GAATATACTACCTGTGTTAGCTGGCCTGCAGGCCGACTGGCCGAGGTTAGAACTGCATGT
TACTGTATATGGCGACTTGTGTATCGTCCACTTTGTTTCTGTTGATTTCACTAGAGTAAT
CCAAGACTGTACCCAAGAATTATTTTTAGAGTTGCGCAGAGTTTGAAAGTGATACGCATG
CCGTTTACTGGAAAAAAAAACTGTGATTTCAAACCCTGAATCTACCCAGTGTAATGCAGG
CCAATAAAGGAAAACTTTAA

Homology of Contig U35_15517 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33810.2	330	1e-165	protein\|ankyrin repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g41720.1	338	0.0
Arabidopsis v10	AT4G35450.5	350	4e-132	\| Symbols: AKR2 \| ankyrin repeat-containing protein 2 \| chr4:16839862-16841759 FORWARD LENGTH=350