barSeed - Barley Seed Development Database

Probe CUST_21102_PI390587928

Source Contig U35_15525

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21102_PI390587928	Hv_44K_v2	AAGGAAATGGGTGACTATTGGTAATGACAATGGTGAAAAACTACTCTTGGTGAACTCAAA	802	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360995	3068	7e-23	3012 - 3068	100	57 / 57	plus	ABC05018
JLOC1	JLOC1_25609.1	1218	8e-25	860 - 919	100	60 / 60	plus
Harvest35	U35_15525	940	3e-25	803 - 862	100	60 / 60	plus

Contig Sequence (940 bp)

>U35_15525 940 Hv_44K_v2
AAAGGCAGCATACCTTGCTGTGATGCGGTCCGTGAGTACCTCAAACAGAGCTGGTTATGA
TGTTCTCCTGAAAATCTACAAGGAAACATCTGAAGCACAGGAGAAGTCTCGTATCTTAGG
CTCGCTGTCTTCATGCCCGGACAAGGATATTGTTGTTGAGGCATTGAACCTTATGCTTAC
AGACGAGGTACGGAATCAAGATGCATTTTATGTCCTTGGTGGTATTAGCTTAGAAGGACG
AGAAGCTGCATGGGCCTGGCTGAAGGATAACTGGGATCACGTCGTCAAGACTTGGCCATC
AAGCTCACTCATATCGGACTTCGTTAATTCTACCGTTTCACCGTTCACCTCCGAGGAGAA
AGCTGCTGAGGTTTCCCAGTTCTTTGCCACTCGCGTGAAGCCGTCGTTCGAAAGAGCGTT
GAAGCAGAGCCTCGAGAGGGTGCGGATCAGCGCTAGATGGATCGACAGCATCAAGAGCGA
GCCCAGCCTTGCTCAAACGGTGCAGCAGCTGCTGCTGCAGGAGTTTTAAGCTGCTCCTTT
GTACGAAGAAGAGATTATGTGCCATGACTGCATAATAAATGTTTTGGAAAGGCTCTGTTC
TAACGAGTAGCAACATTTGATTTTCTGGTGTGCCTTCTCATTAACGATACCGTTTGTTTC
CTCAAAACCCCGAGTCACTTATAGAGTTACTCATACTCAGAAAAGAAGAATCCATATTTC
CACAAACTTTATCTTCAGAGAGGTATAAGTGGCGATGTGTTGAAGAGGATCATATTGTTT
GAAAGGTCTCAATGTTGTTTGGAAGGAAATGGGTGACTATTGGTAATGACAATGGTGAAA
AACTACTCTTGGTGAACTCAAAAAAAAAAAAAAAAAGTTATGTTCATTATCAAGAATGGT
AAAAATGATCCTAGCTTTGCTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_15525 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30810.1	876	3e-91	protein\|puromycin-sensitive aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi3g35350.1	874	2e-96
Arabidopsis v10	AT4G33090.1	879	1e-59	\| Symbols: APM1, ATAPM1 \| aminopeptidase M1 \| chr4:15965915-15970418 REVERSE LENGTH=879