- Probe CUST_21094_PI390587928
- Source Contig U35_27503
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21094_PI390587928 | Hv_44K_v2 | ATCATGGGTTGCCGGTGAAGATGCTGGAGGAGAAAGTCGAGGACGCCACTGGGAAGGGCG | 152 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.543 | 0.619 | 0.579 | 1.676 | 2.517 | 5.451 |
| Raw | 7.282 | 13.121 | 10.875 | 51.273 | 26.895 | 65.061 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52194.1 | 406 | 2e-24 | 173 - 232 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_33414.1 | 445 | 8e-25 | 217 - 276 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC22931 | 249 | 3e-25 | 153 - 212 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27503 | 249 | 3e-25 | 153 - 212 | 100 | 60 / 60 | plus |
Contig Sequence (249 bp)
>U35_27503 249 Hv_44K_v2 GCACCATCAAATTGCCATGTCTGGAGCCCAGGGCGCACAGCCCAAGGGAGCTTTCACGGC GACCACGTACAGGTCGGCGGCAGCTCCCGACGGCGCGGAGGAGTGCCAGCAGCATCAGCC GCCAAGAACAGAGGTACGGTCGAGCAAGGACGATCATGGGTTGCCGGTGAAGATGCTGGA GGAGAAAGTCGAGGACGCCACTGGGAAGGGCGGCCCGGTGTTCGGCGCCGGCACGGAGGA CGGCAAGCC
Homology of Contig U35_27503 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |