barSeed - Barley Seed Development Database

Probe CUST_21093_PI390587928

Source Contig U35_27504

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21093_PI390587928	Hv_44K_v2	GTCCGTGGTCATTGCATTCTTAATAGCTTGCATGTACATTCTGAAGATAAAATTTCCGTT	599	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.698	1.475	1.059	0.854	0.461	0.539
Raw	483.558	645.477	412.892	521.896	98.914	126.676

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12136.1	930	8e-25	856 - 915	100	60 / 60	plus
Harvest35	U35_27504	685	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_27504 685 Hv_44K_v2
GTCAGTGCACATGCTCTTGAATCTTGCCTGCAACCTGAAAATTGTGTTGCAATCAAACCC
TGGAAGCTTGAAATTGATGACACTGAATTGCTGGATCTGATTCCATTTCTTGAGTATCTT
GCCATGGCAAGGCCTTCTGATATCCGGGCAGTGCTTGCTTCCTATCAAGGTCATGATGTT
GCTAAAGAGTTTCGTAAGCGTAACAAAGAACTGGAGAGGCACAGGCAAGAGAAGCAGCAA
CGTAAGAGCATATGGCGGCGGTGATGGATCTGATCTGCTGGAAGGAGAAAGCTCGAAATT
GACCTAATCCTAGCTGTGCGTATTTTTTGTTGGAAGGAGAGCATATTGAGGACTCGTGTG
CATTGCATTTCTAGTCAAATGGCTTGGTAGTTTTGGCAGTTTAGGTTGCCAACATTACGA
CTGATATCAGCAACTCATCCCATCTTCTTATACCGATCTCCATTTCTTGGGCATCCAATT
CCCATGTGAAGAATAGGCTATAGCATATAGTCTCTGTTAAGAGTTTGAGACCACGCCACC
AAGTTTGCCTTATGCTTAGCTGTCATAACATGCGTCGGGATGAGGCGTTTTTCTTAATGG
TCCGTGGTCATTGCATTCTTAATAGCTTGCATGTACATTCTGAAGATAAAATTTCCGTTA
AACGGAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None