barSeed - Barley Seed Development Database

Probe CUST_21078_PI390587928

Source Contig U35_15538

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21078_PI390587928	Hv_44K_v2	TTGTACCGATCTTGTACGAGGAACGTGCGCATGCATTCAACTTGCTTTCCTCTTAAAAAA	2106	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.529	1.423	1.262	0.772	0.253	0.283
Raw	2845.747	4123.397	3206.537	3070.013	355.678	429.924

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_14533.1	1107	1e-22	1004 - 1059	100	56 / 56	plus
Harvest21	ABC03559	2170	3e-25	2100 - 2159	100	60 / 60	plus	ABC03559
Harvest35	U35_15538	2177	3e-25	2107 - 2166	100	60 / 60	plus

Contig Sequence (2177 bp)

>U35_15538 2177 Hv_44K_v2
ACAAACCCTCGCCCCCGCGGCGCCTCCCCCTCCCTCCAGAAACACACCGCCGCCTCAGTC
CCTCCCCCCACAGCAACACCCCTCCTCCTCGCGCGATCCGCCCTTCCAGAGCCTCCTGGT
AGAGGCGGCGCTAGCGCTCCGGCGGCCATGGCGCTCGCCTTCGACGAGTACGGGCGACCC
TTCATCATCCTCCGGGAGCAGGAGAAGAAGTCGCGGCTGCAGGGGCTCGATGCGCAGAAG
GCCAACATCGCCGCCGGCAAGTCCGTCGCGCGCATCCTCCGCACCTCCCTCGGCCCCAAG
GGCATGGATAAGATGCTCCAGTCCCCCGACGGCGACGTCACCATCACCAATGATGGGGCA
ACCATCCTGGAGCTAATGGATGTTGACAACCAGATTGCGAAGCTCATGGTGGAGTTGTCC
CGCAGTCAAGACTATGACATTGGAGATGGTACCACCGGGGTTGTGGTCATGGCTGGGTCG
CTCCTGGAGCAGGCTGAGAAACTGCTAGAACGTGGTATTCACCCAATAAGGATTGCCGAA
GGTTATGAGATGGCGTCGAGGATAGCTGTTGATCACCTTGAAAGCATCTCCACGAAATAT
GAGTTCAGTGCTACCGACATAGAGCCTTTGGTGCAGACCTGCATGACAACTTTGTCCTCA
AAGATTGTTAGCCGTTGTAAGCGGGCTCTAGCTGAGATTGCTGTCAAAGCAGTCCTTGCC
GTCGCTGATTTGGAAAGGAAGGATGTAAATTTGGACTTGATTAAAGTGGAAGGTAAGGTT
GGTGGGAAGCTAGAGGATACCGAGCTAGTACAAGGAATCATTGTTGACAAAGATATGAGC
CACCCTCAAATGCCAAAGAGAATTGAGGATGCTCACATTGCCATTCTCACCTGCCCATTT
GAGCCCCCGAAGCCTAAGACCAAGCATAAGGTTGACATTGACACTGTAGAGAAATTCCAG
ACACTGCGCGGGCAAGAGCAGAAATACTTCGATGACATGGTTCAGAAATGCAAGGATGTT
GGTGCAACCCTAGTTATTTGTCAATGGGGGTTTGATGATGAAGCCAATCATTTACTAATG
CAAAGGGAGCTGCCGGCTGTCAGATGGGTTGGTGGTGTTGAATTAGAATTAATTGCCATT
GCGACAGGTGGGAGGATTGTTCCAAGGTTCCAAGAGTTGACTACCGAAAAGCTTGGGAAG
GCCGGATTAGTCCGAGAGAAGTCATTTGGAACAACAAAAGATCGGATGCTTTACATCGAG
AAGTGTGCCAATTCCAAAGCTGTAACTATTTTCATCCGCGGTGGCAACAAAATGATGATT
GAGGAGACCAAGCGAAGTATTCATGATGCTCTATGTGTTGCAAGGAATCTGATCATCAAC
AACTCAATTGTGTATGGTGGTGGCTCAGCAGAAATATCTTGCTCAATTGCTGTTGACGCT
GCAGCAGATCGGCATCCTGGAGTTGAGCAGTATGCAATCAGGGCATTTGCTGATGCTTTG
GATGCCATTCCACTAGCTTTAGCTGAAAACAGTGGTTTGGCACCTATTGATACTCTCACC
GTCGTAAAATCTCAACACGTCAAGGAGAACAATTCCCGCTGTGGCATCGATTGCAATGAT
GTTGGTACCAACGACATGAAAGAGCAGAATGTTTTCGAGACTCTGATCGGCAAGCAGCAG
CAGATCTTGCTGGCAACACAGGTTGTCAAGATGATCCTCAAGATCGATGATGTTATAACG
CCTTCCGAGTATTGATGGCGCCTGCGATAATGGAAATCGACTGTGCCAAGTGACATGCAC
TCCAGTAGGGTGCACATTTATTGTGTTAATTTGGATTTACCCGTAGAATTCTTACATGGA
GTGCTCACTTCTGTTTGATGAGCTATCTAGCTTTGTGATGTGCCTTCACACTTTGTAGAT
CTTGAGACAGTAGCACAAATCCTGTCGATACCAGTTTTAGCCCTTCGTTGTGTTGGTCTG
CTTAGTGCTATGGTTTTGGACCACAAAAAAAAAAAAAAAAACGTAATCGTTTCTTTCTTT
TGTTTGCTTTGCCTAAATTACCTCTAGGTAAATTATGTGAGTCAGACATATAATGTGTAC
TTGTTTTTGTACCGATCTTGTACGAGGAACGTGCGCATGCATTCAACTTGCTTTCCTCTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_15538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g36700.1	536	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi1g37790.1	536
Arabidopsis v10	AT1G24510.1	535	TCP-1/cpn60 chaperonin family protein \| chr1:8685504-8688101 REVERSE LENGTH=535