barSeed - Barley Seed Development Database

Probe CUST_21077_PI390587928

Source Contig U35_41801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21077_PI390587928	Hv_44K_v2	CCTCCTGCCACGACATGACGCGGCAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACG	39	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.252	0.216	0.524	2.332	1.840	3.322
Raw	2.658	3.868	14.703	106.572	28.197	54.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC37026	459	3e-25	40 - 99	100	60 / 60	plus
Harvest35	U35_41801	459	3e-25	40 - 99	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_41801 459 Hv_44K_v2
GCTAGCTACCACAAAGCTCGCGCGGCAAAAAGATGGCGGCCTCCTGCCACGACATGACGC
GGCAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACGAGGACGTGCGGCAGTGCCTCA
TCTTCGACGGCCCCGACGCCGGCGCGCGCCTCATCGGCCTCGAGTACATCGTCACCGAGG
AGCTGTTCCTCACGCTGCCCGACGAGGAGAAGCCGCTGTGGCACACCCACGAGTTCGAGG
TCAGGGGCGGCGTGCTCTTCATGCCCGGCGTGCCCGGCGTCGTCGAGCGCCGCGACCTCG
AGAAGGTGGCCAGGACCTACGGCAAGACCGTCCACTTCTGGCAGGTCGACCGCGGCGACG
CCCTCCCGCTCGGCGTGCCCCAGATCATGATGGCCCTCACCCGGGAGGGCCAGCTCCGGC
AGGACCTCGCCGACTGTGTGGAGAGGAAGTTCGGCGTGT

Homology of Contig U35_41801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49440.2	239	6e-88	protein\|DUF1264 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g10450.1	237	3e-93
Arabidopsis v10	AT1G05510.1	241	3e-72	Protein of unknown function (DUF1264) \| chr1:1629527-1630690 FORWARD LENGTH=241