barSeed - Barley Seed Development Database

Probe CUST_21073_PI390587928

Source Contig U35_27510

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21073_PI390587928	Hv_44K_v2	GACAACAAGTGCCTATCTGAAAGAAAGGTTTTCTGCAAGAATTGCTAAACTCTCACGAGG	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24602.3	2052	2e-24	1289 - 1348	100	60 / 60	plus	ABC46017
MLOC	MLOC_24602.1	2454	2e-24	1418 - 1477	100	60 / 60	plus	ABC46017
MLOC	MLOC_24602.4	1669	2e-24	639 - 698	100	60 / 60	plus	ABC46017
MLOC	MLOC_24602.2	2430	2e-24	1381 - 1440	100	60 / 60	plus	ABC46017
JLOC1	JLOC1_16904.1	2489	8e-25	1380 - 1439	100	60 / 60	plus
Harvest21	ABC26526	494	3e-25	433 - 492	100	60 / 60	plus
Harvest35	U35_27510	494	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_27510 494 Hv_44K_v2
ATTGTTGAATTTGAAAATGCTAGAGTGCTTTTAACGGATCAACGGGTGAATGAAATCCAA
GACATACTTCCTTTGCTGGAGAAGACCACACAGTTGAGTGTCCCTTTGTTGATTATTGCC
GAGGATATCTCGCATTCGGTGTACTCCACTCTGGTTCTTAACAAACTGAATGGTTTGCTA
AATGTCGCGGTTGTCAAATGTCCCGGTTTGGGAGATGAAAAGAAGGCTATTCTCCAAGAT
ATTGCCATTATGACAGGTGCAGATTTCTTTGTTAGTGACCTTGGTTGGGGTCTTCAAGCA
ATTACATCTGATCAGCTGGGTATGGCTCATAAGATCACTATCACAAGTGAATCTACAACT
ATAATTGCGCATCCCTCTATGCGACCAGAGATTGAGGCTAGGATTATGCAACTAAAGAAA
GATCTATAGGAGACAACAAGTGCCTATCTGAAAGAAAGGTTTTCTGCAAGAATTGCTAAA
CTCTCACGAGGTGT

Homology of Contig U35_27510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38980.2	358	1e-75	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi4g38090.1	591	3e-79
Arabidopsis v10	None