barSeed - Barley Seed Development Database

Probe CUST_21072_PI390587928

Source Contig U35_41804

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21072_PI390587928	Hv_44K_v2	TATGCATTAATTTTGAACGGTGGAAACTGAAAAGTAACACTGAGAATCAAGGTTTCGTTC	17	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360873	1832	7e-23	1772 - 1831	98	59 / 60	plus	ABC08742 ABC38593
MLOC	AK364287	2421	7e-23	2049 - 2108	98	59 / 60	plus	ABC08742 ABC38593
MLOC	MLOC_49413.3	2208	7e-23	206 - 265	98	59 / 60	minus	ABC08742 ABC38593
JLOC1	JLOC1_31633.1	3237	4e-23	1884 - 1943	98	59 / 60	plus
Harvest21	ABC08742	2112	3e-25	2036 - 2095	100	60 / 60	plus	ABC08742
Harvest35	U35_41804	570	3e-25	18 - 77	100	60 / 60	minus

Contig Sequence (570 bp)

>U35_41804 570 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAACGAAACCTTGATTCTCAGTGTTACTTTTCAGTTTCCACCG
TTCAAAATTAATGCATAACATGATAGTCCTTTTCTGATGTAAAACAAAGGATTTGGATTC
TCGTTTCAAAAGTGTCTATTTTGGTGCCGCGTAAAAACATGTTTGAATGACACAAGATTT
TCCATACTGAAGTGCAACGTTGCACGAACTGAGGTGTGTGCAAGGACACAGATGAGGTTA
GTAGTGCACCAAGCACCATCTAGAGTTGCTTTATGGTCAATTCAGCTCTCAGATGCAGTA
CCCCATTGATGAAGAAGAGGCTATCATCAGCCATAAACGAAGGCCAGGGAATTGCAAAGA
GATTGCGGTAGCCAACCGCCTTCCCACCAGTGAAGGTGTAGCAGCCCTTGTACTTGCTGA
CAAACTCACCCGACGGCCTTGTCCTTGCAGCAAACTCGTAGTCCACGGTAACACTTGTTG
AGCCTTTCTCTTGCATCCCTAAGAAGAGACCAAAGCAGTGGAAAGCGCTTTGCTGGTCCA
TGTTGCAATGTGCTGAGAGGAAGAATCCCT

Homology of Contig U35_41804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g31100.1	537	1e-61	protein\|E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed
Brachypodium v1_2	Bradi1g39260.1	563	6e-64
Arabidopsis v10	AT3G61600.1	561	2e-52	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-protein 1 \| chr3:22795704-22797953 FORWARD LENGTH=561