barSeed - Barley Seed Development Database

Probe CUST_21070_PI390587928

Source Contig U35_41805

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21070_PI390587928	Hv_44K_v2	TTGGCCGAAGACAAGGACACCACTTACATATTGATATCTGTTGGATCAAAGCAAGTTCTG	541	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9793.3	4045	2e-24	2554 - 2613	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.2	4344	2e-24	2482 - 2541	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.1	4309	2e-24	2499 - 2558	100	60 / 60	plus	ABC25200
JLOC1	JLOC1_6353.4	4295	8e-25	2434 - 2493	100	60 / 60	plus
JLOC1	JLOC1_6353.3	4325	8e-25	2464 - 2523	100	60 / 60	plus
JLOC1	JLOC1_6353.2	4343	8e-25	2482 - 2541	100	60 / 60	plus
JLOC1	JLOC1_6353.1	4339	8e-25	2478 - 2537	100	60 / 60	plus
Harvest21	ABC37033	604	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_41805	604	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_41805 604 Hv_44K_v2
CGCAAATCATGCCTCTGGTAACCAATTGGTTGGTACCTATGCAATAGGTTTCACCTCTGC
GGATTTTATCATTTGGGACCTTGAAAATGATACAAAGCTGGTTCAAATATCATGCGGAGG
ATGGCGGCGCCCTTACTCTTATTATCTTGGGACAGTCCCTGAGTATCAAAACTGTTTCGC
CTTCGTGAAGGACCACAGTATTCATGTCCACAGACACTGGGCACCAGCTCAAGATAGGAA
GCTGCTTCCTCAAGTTTTTCATACCCAGTTCCATGGAAGAGAAGTGCATTCTCTTTGCTT
CATAGATCCCGCAAGCTATTCACATCCTGAGAAGAGTACAGATTTGTGGATTGCAACCGG
GTGCGAAGATGGAACCGTCCGGCTTACAGGGTACTCCGCTAGTAGTGATGGAAGATGGTG
TTCATCCAAGCTGCTGGGGGAGCATGTTGGTGGGTCAGCTGTGAGAGATACGTGCTTCGT
CCCAAAGACTTACACATTAGCAGATAAATCATGCAACTCTAGTGTCAGTTCTGCCGACAT
TTTGGCCGAAGACAAGGACACCACTTACATATTGATATCTGTTGGATCAAAGCAAGTTCT
GACG

Homology of Contig U35_41805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02110.2	1316	5e-106	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g77780.1	1343	5e-120
Arabidopsis v10	AT4G01860.1	1308	2e-62	Transducin family protein / WD-40 repeat family protein \| chr4:801713-808018 REVERSE LENGTH=1308