barSeed - Barley Seed Development Database

Probe CUST_21069_PI390587928

Source Contig U35_27512

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21069_PI390587928	Hv_44K_v2	GGAACTTTCAGAACCAGAAACAATACCTTCTGAGCCCTTGGCTTTAATTTCGAAGTTGAT	604	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38412.2	1125	2e-24	851 - 910	100	60 / 60	plus	None
MLOC	MLOC_38412.1	1230	2e-24	977 - 1036	100	60 / 60	plus	None
MLOC	AK373023	1191	7e-23	632 - 691	98	59 / 60	plus	ABC19191
JLOC1	JLOC1_24973.2	1092	8e-25	834 - 893	100	60 / 60	plus
JLOC1	JLOC1_24973.1	1154	8e-25	896 - 955	100	60 / 60	plus
Harvest21	ABC22471	664	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_27512	664	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_27512 664 Hv_44K_v2
GCATGTTTCCCCATCTTCCTCCTCCGCTGCTCCAGGAATAGAAGCGGCGAACAGAAGGGG
GGTCGAAGCTATCCCAGCTTTCCAAACCCCACTCTAGCTAGACCCGTGCTGATTGATTTC
TGGCTGAAATTCTGTCCAAGATGAGCTCCGAGTCCAGGGGGCTGCTCGGAATCGACCCCA
ACGAGCTCCGCTTCGCCTTCGAGTTAAAGAAGCAAATCTCGTGTTCACTGCATCTAACAA
ACACAACGGACCAATACATCGCCTTCAAGGTTAAGACAACGAGCCCAAAGAAGTACTGCG
TCCGGCCAAACAACGGCATTGTGCCACCGCGATCAACATTCGATGTTCTAGTAACAATGC
AAGCGCAGCGGGAGGCGCCACCGGATATGCAATGCAGGGACAAGTTCCTTGTGCAGAGCG
CCGTGGTGAGCCAGGACATCGCACCAAAGGATATCAGCGGAGACATGTTCACCAAAGAAT
CGGGCAACGTGGTGGACGAGGTGAAGCTGCAGGTTGTTTACGCTCCACCATCGAAACCGA
CATCCATAAATGAGGGTTCTGATCAGGAAAGTCTGGGAAGTTGGAGTTATCAAGAGACAA
CAAGGGAACTTTCAGAACCAGAAACAATACCTTCTGAGCCCTTGGCTTTAATTTCGAAGT
TGAT

Homology of Contig U35_27512 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42940.1	260	2e-87	protein\|MSP domain containing protein, expressed
Brachypodium v1_2	Bradi3g50040.1	228	1e-101
Arabidopsis v10	AT2G45140.1	239	7e-57	\| Symbols: PVA12 \| plant VAP homolog 12 \| chr2:18611029-18612971 FORWARD LENGTH=239