barSeed - Barley Seed Development Database

Probe CUST_2105_PI390587928

Source Contig U35_18402

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2105_PI390587928	Hv_44K_v2	TTTTCTGGATAATGCGCTCTGTTTACCGTCAATAAAGAAATATCTGGTCATTTTGGGAAA	734	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.657	1.692	1.172	0.874	0.452	0.480
Raw	5241.363	8215.487	5095.350	6002.340	1074.264	1252.373

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38048.1	797	3e-22	9 - 67	98	58 / 59	minus	ABC11368 ABC16623
JLOC1	JLOC1_24703.1	905	1e-22	735 - 793	98	58 / 59	plus
Harvest21	ABC11368	808	6e-22	735 - 794	97	58 / 60	plus	ABC11368
Harvest35	U35_18402	810	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (810 bp)

>U35_18402 810 Hv_44K_v2
GCACCCGTGCTCGCCGATCCACAGAAAACGCAGCTCTAGGTTTCTCCTCTCACGCGCCCA
AGCTCCCACTCCGCCGCCCGCCGCCCGCCGCCGGTCTCCGTCGCCTCCCTCTTCCCCGAG
CCGCTCCGCCGCGACCCGTCTCCGCACCAGCTCTTCTTCCCTGATTCTAGGGTGGAAGTA
CTGTCTAAACCAAGAGCTCAAAGATGAACAAGGGGAAGATTTTTAAGTTAGCCAAGGGAT
TCCGAGGAAGGGCTAAAAACTGCATAAGAATTGCCAGGGAGCGTGTAGAAAAAGCATTGC
AATATTCTTACAGGGATCGGCGCAACAAGAAAAGGGACATGCGATCTCTCTGGATCGAGC
GCATCAATGCTGGTACACGACTCCATGGGGTGAACTATGGCAACTTCATGCATGGACTGA
TGAAGGAGAATGTCCAACTCAACAGGAAGGTACTCTCGGAGCTGTCGATGCATGAACCGT
ACAGCTTCAAGGCCCTTGTTGATGTATCCCGCACTGCGTTCCCTGGGAACAGGCCGGCTG
CCAAGAAGGAAGGACTAGCAAGCATTCTATAGACAATCCCTCCCTCGACAATTCAGTTTG
CTGGTTGAAACCTACCAAAGCCTTGTGATGAGCTCATGTGATGTGGGTATGTATCACATC
ACGGTTTAGTCCATGTTATTCGGTCTGTTGGCCTGTTGAACAGAGGGTGCATGTACTGTA
CTTGGTGCGCTTCTTTTTCTGGATAATGCGCTCTGTTTACCGTCAATAAAGAAATATCTG
GTCATTTTGGGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53280.1	123	9e-79	protein\|50S ribosomal protein L20, putative, expressed
Brachypodium v1_2	Bradi2g49030.2	123	1e-79
Arabidopsis v10	AT1G16740.1	126	1e-67	Ribosomal protein L20 \| chr1:5727773-5728950 FORWARD LENGTH=126