barSeed - Barley Seed Development Database

Probe CUST_21058_PI390587928

Source Contig U35_15541

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21058_PI390587928	Hv_44K_v2	GACCAGTTGTATACCAAACATTCCTTCTGATTAACGAAGATTATCTGAGATCCGAAAAAA	830	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.201	4.639	1.265	0.810	0.374	0.766
Raw	216.205	759.410	163.039	167.747	26.542	61.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77452.2	1631	3e-22	821 - 876	100	56 / 56	plus	ABC03448 ABC03449 ABC03452 ABC13198
MLOC	MLOC_77453.1	2201	3e-22	971 - 1026	100	56 / 56	plus	ABC03448 ABC03449 ABC03452 ABC13198
MLOC	MLOC_77452.1	1657	3e-22	980 - 1035	100	56 / 56	plus	ABC03448 ABC03449 ABC03452 ABC13198
JLOC1	JLOC1_51649.1	1508	1e-22	841 - 896	100	56 / 56	plus
JLOC1	JLOC1_51650.1	2366	1e-22	1155 - 1210	100	56 / 56	minus
Harvest21	ABC03448	871	3e-25	801 - 860	100	60 / 60	plus	ABC03448
Harvest35	U35_15541	901	3e-25	831 - 890	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_15541 901 Hv_44K_v2
GGGGAGAGGTCGTGAAACAGAGCAAGCAAGAGCAACAGCAACAGCAAGCATATCTTCGTT
ACCCTTCTACTACTTGAGGCCCGCCCGTCCATTGTCTTACCAGAAGCCGAGAAACTTGCA
ACCATGGGCAGATCTGCTGGAGCTCCTCAGGTCCTCTCGGCGCACCAGGAAGACGAGGAC
CTGTTCGAGACCTCCTCCTCCTTCTCCTGCGACTCCGACGACGAGGCACAGTTCTCGGAC
GGCGAGGACCAGTTCGTGCCGGCCTCCCCGCCGGCGCGGCGACTGAACTCCGACGGCGTC
TACGATCTGTCGTCCATCAAGGCCGAGCTCTCCGTCAAGAAAGGGGGGTTGTCCAAGTAC
TACGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCGGAGGTGAGGTGCCTGGAGGACCTG
CCCAAGAAGAGACCCTACAACAAGAAGATGAAGCCATGCCGGAGCCACGTCGAGATCGAC
GGTGACCAGAGAGCTTGCCCCGCGCCTGGTTCTAACAACAGCAGCAAGGTAGTCGCCAAG
CCGACCTCCGGGAGCTCCTGCGCAAACCTGATGATGGCGCGGAGCGGCAGCTCCAGCATG
CTCTACAGGCCTCCCGCCATCCCCGTCAACAAGAGCGCCTGCCATCAGTAGGGAGGGAGG
GTTCGCGGTTGAGACTCAGAGTGTCTGTCCAGGGCTGGCTTCGCGTCTCTTCTTTGTTCC
TTGAGGATGGGGATTTTTCTTGGCGGGCCTATTAGCCTGTCAAATGTAAAGAGGCTTCTG
CATCCATGTTGTTCGAGAAGGAATTGATTGATCCAGTGTGTAAATAGAGAGACCAGTTGT
ATACCAAACATTCCTTCTGATTAACGAAGATTATCTGAGATCCGAAAAAAAAAAAAAAAA
A

Homology of Contig U35_15541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53730.1	176	6e-64	protein\|expressed protein
Brachypodium v1_2	Bradi2g49320.3	194	9e-68
Arabidopsis v10	None