barSeed - Barley Seed Development Database

Probe CUST_21057_PI390587928

Source Contig U35_15542

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21057_PI390587928	Hv_44K_v2	GAGAGACCGGTTGTATACCAAACATTTCTTCTGATTAACAAAGATTATCCGAGATCAAAA	763	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39717.1	397	3e-22	326 - 381	100	56 / 56	plus	ABC03448 ABC03449 ABC03452
JLOC1	JLOC1_25910.1	551	1e-22	326 - 381	100	56 / 56	plus
Harvest21	ABC34912	650	3e-25	588 - 647	100	60 / 60	plus
Harvest21	ABC03447	834	3e-25	764 - 823	100	60 / 60	plus
Harvest21	ABC03449	574	1e-23	15 - 75	98	60 / 61	minus	ABC03449
Harvest35	U35_38925	650	3e-25	588 - 647	100	60 / 60	plus
Harvest35	U35_15542	836	3e-25	764 - 823	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_15542 836 Hv_44K_v2
GGAGCAAGCAAAGAGCAACAGCAACAGCAAGAGAAAGAATATATTACATCCATAGACAGC
AGCTCATTGTCTTACCGGAAGCCGAGGAACTTGCAACCAGCCATGGGCAGATCTGCCGGA
GCTCCTCAGCCGCGCCAGGAAGACGAGGACCTGTTCGAGACCTCCTCCTCCTTCTCCTGC
GACTCCGACGACGAGGCACGGTTCTCGGACGGCGAGGACCAGTTCGTGCCGGCCTCCCCG
CCGGCGCGCAGGCTGGTTTCAGAGGGCGTCTACGATCTGTCGTCGATGAAGGCAGAGCTC
TCCGTCAAGAAAGGGGGGTTGTCCAAGTACTACGACGGCAAGTCCCAGTCCTTCGCGTGC
ATGTCGGAGGTGAGGTGCCTGGAGGACCTGCCCAAGAAGAGACCCTACAACAAGAAGATG
AAGCCATGCCGGAGCCACGTCGAGATCGACGGTGACCAGAGAGCCTGCCCCGCGCCTGGT
TCTAACAACAGCAGCAAGGGAGTCGCCAAGCAGACCTCCGGGAGCTCCTGCGCGAACCTG
ATGATGGCGCGGAGTGGCAGCTCCAGCATGCTCTACAGGCCTCCCGCCATCCCCGTCAAC
AAGAGCGCCTGCCATCAGTAGGGCTCGCGGTGCCATTCCGCGCCTCTTCTTTGTTCCTCG
AGGATGAGGATTTTTCTTGGCGGGTCTATTAGCCTGTCAAATGTAAAGAGGCTTTTGCAT
CCATGTTGTTCGGGAAGACATTGATTGATTCAGTGTGTAAATAGAGAGACCGGTTGTATA
CCAAACATTTCTTCTGATTAACAAAGATTATCCGAGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53730.1	176	4e-62	protein\|expressed protein
Brachypodium v1_2	Bradi2g49320.3	194	2e-61
Arabidopsis v10	None