barSeed - Barley Seed Development Database

Probe CUST_21056_PI390587928

Source Contig U35_15543

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21056_PI390587928	Hv_44K_v2	TAAGTCTCCGAGGAACTTCATAAGTTCATCATGAACATTTGCAGCAAAAGGGAATTTTTT	303	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18540.1	682	3e-21	7 - 66	97	58 / 60	minus	ABC03448 ABC03452
JLOC1	JLOC1_12830.1	621	2e-21	9 - 68	97	58 / 60	minus
Harvest21	ABC03450	567	3e-25	305 - 364	100	60 / 60	plus
Harvest21	ABC45201	387	6e-22	298 - 357	97	58 / 60	plus
Harvest35	U35_15543	566	3e-25	304 - 363	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_15543 566 Hv_44K_v2
GGCAAAGAGCAACAGCAACAGCAAGAGAAAGAATATATTACATCCATAGACAGCAGCTCA
TTGTCTTACCGGAAGCCGAGGAACTTGCAACCAGCCATGGGCAGATCTGCCGGAGCTCCT
CAGCTGCGCCAGGAAGACGAGGACCTGTTCGAGACCTCCTCCTCCTTCTCCTGCGACTCC
GACGACGAGGCACGGTTCTCGGACGGCGAGGACCAGTTCGTGCCGGCCTCCCCGCCGGCG
CGCAGGCTGGTTTCAGAGGGCGTCTACGATCTGTCGTCGATGAAGGCAGAGCTCTCCGTC
AAGTAAGTCTCCGAGGAACTTCATAAGTTCATCATGAACATTTGCAGCAAAAGGGAATTT
TTTTTCCTGACCGTGCTGTTCTTCTCTCTTTTGCAGGAGAGGGGGGTTGTCCAAGTACTA
CGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCGGAGGTGAGGTGCCTGGAGGACCTGCC
CAAGAAGAGACCCTACAACAAGAAGATGAAGCCATGCCGGAGCCACGTCGAGATCGACGG
TGACCAGAGAGCCTGCCCCGCGCCTG

Homology of Contig U35_15543 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None