barSeed - Barley Seed Development Database

Probe CUST_21054_PI390587928

Source Contig U35_15545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21054_PI390587928	Hv_44K_v2	TTTTTCTTGGCGGGCCTATTAGCCTGTCAAATGTAAAGAGGCTTCTGCATCCATGTGTTC	791	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77452.2	1631	7e-23	724 - 784	98	60 / 61	plus	ABC03448 ABC03449 ABC03452 ABC13198
MLOC	MLOC_77453.1	2201	7e-23	874 - 934	98	60 / 61	plus	ABC03448 ABC03449 ABC03452 ABC13198
MLOC	MLOC_77452.1	1657	7e-23	883 - 943	98	60 / 61	plus	ABC03448 ABC03449 ABC03452 ABC13198
JLOC1	JLOC1_51649.1	1508	4e-23	744 - 804	98	60 / 61	plus
JLOC1	JLOC1_51650.1	2366	4e-23	1247 - 1307	98	60 / 61	minus
Harvest21	ABC03452	885	3e-25	11 - 70	100	60 / 60	minus	ABC03452
Harvest21	ABC03448	871	1e-23	704 - 764	98	60 / 61	plus	ABC03448
Harvest35	U35_15545	861	3e-25	792 - 851	100	60 / 60	plus
Harvest35	U35_15541	901	1e-23	734 - 794	98	60 / 61	plus

Contig Sequence (861 bp)

>U35_15545 861 Hv_44K_v2
GGCAACAGCAAGCATATCTTCGTTACCCTTCTACTACTTGAGGCCCGCCCGTCCATTGTC
TTACCAGAAGCCGAGAAACTTGCAACCATGGGCAGATCTGCTGGAGCTCCTCAGGTCCTC
TCGGCGCACCAGGAAGACGAGGACCTGTTCGAGACCTCCTCCTCCTTCTCCTGCGACTCC
GACGACGAGGCACAGTTCTCGGACGGCGAGGACCAGTTCGTGCCGGCCTCCCCGCCGGCG
CGGCGACTGAACTCCGACGGCGTCTACGATCTGTCGTCCATCAAGGCCGAGCTCTCCGTC
AAGTAAGTTCCTCAGGAAACACCTTCCTTCTTCATGTATCAACAGAGTAGCAAAATGGAA
GTTTTTCCTGACCGTGCTGATCTTCTCTCTTTGCAGGAAAGGGGGGTTGTCCAAGTACTA
CGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCGGAGGTGAGGTGCCTGGAGGACCTGCC
CAAGAAGAGACCCTACAACAAGAAGATGAAGCCATGCCGGAGCCACGTCGAGATCGACGG
TGACCAGAGAGCTTGCCCCGCGCCTGGTTCTAACAACAGCAGCAAGGTAGTCGCCAAGCC
GACCTCCGGGAGCTCCTGCGCAAACCTGATGATGGCGCGGAGCGGCAGCTCCAGCATGCT
CTACAGGCCTCCCGCCATCCCCGTCAACAAGAGCGCCTGCCATCAGTAGGGAGGGAGGGT
TCGCGGTTGAGACTCAGAGTGTCTGTCCAGGGCTGGCTTCGCGTCTCTTCTTTGTTCCTT
GAGGATGGGGATTTTTCTTGGCGGGCCTATTAGCCTGTCAAATGTAAAGAGGCTTCTGCA
TCCATGTGTTCGAGAAGGAAT

Homology of Contig U35_15545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g49320.1	243	1e-51
Arabidopsis v10	None