barSeed - Barley Seed Development Database

Probe CUST_21050_PI390587928

Source Contig U35_15548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21050_PI390587928	Hv_44K_v2	TTTGCTTGTTACAAGTGAGACAAAGAGTGAGCCGTCGTCACCTTCACGCCTGAATTAATG	1428	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.131	4.887	1.279	0.730	0.283	0.317
Raw	13257.200	12352.543	2863.660	2605.614	353.935	427.494

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4947.1	935	2e-24	716 - 775	100	60 / 60	minus	ABC29001
JLOC1	JLOC1_3150.1	1590	8e-25	1414 - 1473	100	60 / 60	plus
Harvest21	ABC29001	358	3e-25	265 - 324	100	60 / 60	plus	ABC29001
Harvest35	U35_15548	1517	3e-25	1429 - 1488	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_15548 1517 Hv_44K_v2
GCTCCCCCCTTTCCCTCTGCTCCCCACTCCCGTGCGACCGCTGGTTGTGGTTGGTGTGGT
GGCTGCTGCGCGCATCATCAGACGAGGAGGAGACGCTCGAGCCTCCCTCGCCCACCAACC
ACATCACAGCGCGCGACGCACAGATTTGATTGAGAGAGAATGGCGGCGCCGTCGTCCCTC
GCCTCCTCCCACCTCTCCCGCCTCGCCGCCGCCGGCGCCCCGGCCCCGCAGCCCCACCAC
CAGAACCACCAGCTCCGCCTCGGCTGCTCCCGCCGCCGCGCGCAGCGCCTCGTCGCCATG
GCCGGATCCGGAAAGTTCTTCGTCGGAGGCAACTGGAAGTGCAATGGAACAAAGGAATCC
ATTAGCAAGCTTGTCTCTGATTTGAATGCTGCCACACTCGAAAGCGATGTAGATGTTGTG
GTAGCACCGCCATTCATCTATATCGACCAGGTCAAGAGTTCACTAACTGACCGTATTGAG
GTGTCTGCTCAAAACACATGGATTGGAAAAGGAGGAGCTTTCACTGGAGAGATCAGTGCG
GAGCAGTTGGTGGACATTGGCTGCCAATGGGTTATTCTTGGTCACTCTGAGCGCAGACAT
GTTATCGGTGAAGATGATCAGTTTATTGGGAAGAAGGCTGCATATGCCTTGAGTCAAAAT
CTTAAGGTTATGGCATGCATAGGGGAACTGTTGGAAGAGAGGGAGGCTGGGAAAACTTTT
GATGTCTGTTTTAAGCAGATGAAGGCTTTTGCAGATAATATTACGGACTGGAAAAACGTT
GTTATTGCGTACGAGCCTGTGTGGGCTATTGGAACCGGAAAGGTTGCTTCTCCTGAGCAA
GCTCAAGAAGTTCATGCCGCTGTTCGTGATTGGTTAAAAACCAATGTATCAGCTGATGTT
GCTTCGACCGTTCGAATTATCTATGGAGGTTCTGTAAACGCAGCAAATTGTGCTGAGCTA
GCAAAGAAGGAAGATATCGATGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGGGTCCTGAC
TTTGCCACCATCTGCAACTCGGTGACTTCCAAGAAAGTTACAGCCTGATGTAGACCACCA
CCTCCATGGTACTCCCTCCGTTCCTAAATATAGGACTTTTTAGAGATTTCACTATAGACT
AGATACGGAGCAAAATGAATGAATCTACATCCTAAAATATGAACACATGCATCCGTGTGT
AGTTCATAGTGGAATCTCTAAAAAGGTCTTATATTTAGGAATGGTGGGAGTAGAAAATAA
GTGATCAGAGAGAAGCAGCTTGGCTAGTGCGTCAGAAAGTGTGAGATAGGTGCTCCGTGT
GAACCGAATCGTGTTGAGTTGTGGTCTGGCTGGTTGTGCCGATCCGTACCACAGAGGAAT
AATGCGACATGGCACCATTTTCCTTCTCATGGACCGTTTGTACGGGAGTTTGCTTGTTAC
AAGTGAGACAAAGAGTGAGCCGTCGTCACCTTCACGCCTGAATTAATGCGTGCTGATGCC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_15548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36450.1	305	2e-177	protein\|triosephosphate isomerase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g36310.1	303	0.0
Arabidopsis v10	AT2G21170.1	315	1e-152	\| Symbols: TIM, PDTPI \| triosephosphate isomerase \| chr2:9071047-9073106 REVERSE LENGTH=315