barSeed - Barley Seed Development Database

Probe CUST_21045_PI390587928

Source Contig U35_27521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21045_PI390587928	Hv_44K_v2	TTGGTGAGGGATCTCATCATGCAGAACTCAAAAACCAGTAGGAATGGCTCTTCAGATGCT	142	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360346	2414	2e-24	154 - 213	100	60 / 60	plus	ABC26412
MLOC	MLOC_50119.2	1803	2e-24	1403 - 1462	100	60 / 60	minus	None
MLOC	MLOC_50119.1	1559	2e-24	1403 - 1462	100	60 / 60	minus	None
MLOC	MLOC_50119.3	1903	2e-24	1403 - 1462	100	60 / 60	minus	None
JLOC1	JLOC1_32013.4	1852	8e-25	392 - 451	100	60 / 60	plus
JLOC1	JLOC1_32013.3	1534	8e-25	74 - 133	100	60 / 60	plus
JLOC1	JLOC1_32013.2	1607	8e-25	147 - 206	100	60 / 60	plus
Harvest21	ABC25422	446	3e-25	143 - 202	100	60 / 60	plus
Harvest35	U35_27521	447	3e-25	143 - 202	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_27521 447 Hv_44K_v2
CGCTCGGCTCGGCACGCACAGTCGCACCACGCGCTAGCAGACAGCCGCAGCAGTGGGAAG
AGAGGAGAAGCAGAAGAAGAACAAGAACAGCAAGGAGGAGAGAGAGAGAGCAACAAGAGG
AGTTGAGTGAGGGCACAAGGATTTGGTGAGGGATCTCATCATGCAGAACTCAAAAACCAG
TAGGAATGGCTCTTCAGATGCTCCGCAGAGGACGTCTCCAGCAACTCCACGGTCGTCTCG
TGTGGCGAAAACTGGAGGGAATGAAACTGATTCCGCAGGGATCACACCAACAAGAACACC
TACAGAGAGGAGTCCAAAGGTCATCGAGCGTCGTTCCCCACGGAGCCCAGTTACTGAGAA
GAAGCGCCCAAGTAGGCTAACTGAGCTGGACTCTAAGGTCAACCAGCTCCAAGATGAGCT
GAAGAAGACCAAGGAACAGTTGAGTGC

Homology of Contig U35_27521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g37920.1	646	4e-52
Arabidopsis v10	None