- Probe CUST_21044_PI390587928
- Source Contig U35_41815
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21044_PI390587928 | Hv_44K_v2 | CGAAGACTAGTAGAGGGGAGGATGATGGTTACTCATACAAGAGGCACATAGAGATCAATG | 333 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.219 | 1.050 | 1.522 | 0.880 | 0.422 | 0.412 |
| Raw | 317.582 | 381.708 | 535.392 | 448.609 | 83.359 | 88.481 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53255.3 | 2854 | 2e-24 | 129 - 188 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53255.1 | 4007 | 2e-24 | 133 - 192 | 100 | 60 / 60 | plus | ABC13041 |
| MLOC | MLOC_53255.5 | 2965 | 2e-24 | 125 - 184 | 100 | 60 / 60 | plus | ABC13041 |
| MLOC | MLOC_53255.6 | 3376 | 2e-24 | 125 - 184 | 100 | 60 / 60 | plus | ABC13041 |
| MLOC | MLOC_53255.2 | 2964 | 2e-24 | 129 - 188 | 100 | 60 / 60 | plus | ABC13041 |
| MLOC | MLOC_53255.4 | 3614 | 2e-24 | 126 - 185 | 100 | 60 / 60 | plus | ABC13041 |
| JLOC1 | JLOC1_34195.7 | 4229 | 8e-25 | 1114 - 1173 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34195.6 | 4695 | 8e-25 | 1151 - 1210 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34195.5 | 4583 | 8e-25 | 1151 - 1210 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34195.4 | 4574 | 8e-25 | 1151 - 1210 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34195.3 | 4035 | 8e-25 | 1161 - 1220 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34195.2 | 4724 | 8e-25 | 1165 - 1224 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34195.1 | 4298 | 8e-25 | 1165 - 1224 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37052 | 393 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41815 | 393 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus |
Contig Sequence (393 bp)
>U35_41815 393 Hv_44K_v2 GGAGCAGTGGGCAGCATAAGGATGACAGAGATAGGGATAGGGAGAGAGACAGAGAAAAGG AGAGGGAAAGGGAGAAAGAATGGGAGAGACTGAAGGAGAGAGAGAGGGAAAGGGGTCGGG AGAGAGAGAAGGAAAGAGAACGGGAGAAGGAGAAGGAGAGAGAACGGGAGAAGGAGAAGG AGAGGGAGCGGGATAAAGAGCGAGACAGGGAACGAGAGCGGGAGCGTGACAGGGAACGGG AGCGCGAGAGGCAAAAGGATAGGGAGAGGGACAAGAAAGACTATGATTCGAAGCATGAGA AGTATGAAGATGGCAGTGCCAGGAAGAATGGATCGAAGACTAGTAGAGGGGAGGATGATG GTTACTCATACAAGAGGCACATAGAGATCAATG
Homology of Contig U35_41815 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |