barSeed - Barley Seed Development Database

Probe CUST_21040_PI390587928

Source Contig U35_41720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21040_PI390587928	Hv_44K_v2	TTTCTAGTTACCGTATATTGACGGATATTCTAGGTCTTGAGGATCACCTGGGTGACATGG	599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362230	3158	2e-24	1680 - 1739	100	60 / 60	plus	None
MLOC	MLOC_81660.4	1763	2e-24	1313 - 1372	100	60 / 60	minus	None
MLOC	MLOC_81660.1	2634	2e-24	2184 - 2243	100	60 / 60	minus	None
JLOC1	JLOC1_54315.1	2608	8e-25	393 - 452	100	60 / 60	plus
Harvest21	ABC36858	662	3e-25	600 - 659	100	60 / 60	plus
Harvest35	U35_41720	662	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_41720 662 Hv_44K_v2
GAAGCTTGAAGAAGAATGCGATGAGGAAAGCTTGAAGTTTCTTCCTAAAGCAGTTGATAC
TGTGAGAAAGCAGGTCATACGCAAGAGAATAATTAAAGAAGGCCTTAGAGTCGATGGTAG
ACGACTTGATGAGGTGCGGCCGTTGTATTGTGAATCGAGCACATACCCGATATTGCATGG
TTCTGCACTGTTTTCGCGTGGAGATACTCAGGTTTTATGTACAGTTACCCTTGGTGCTCC
TGGTGATGCTCAGCGATTGGATTCAATTGTTGGCCCACCAACAAAGCGTTTCATGCTTCA
TTATAGTTTTCCACCATTTTCAATAAACGAAGTTGCCAAACGTGGGGGTTTGAATCGGCG
TGAAGTTGGACATGGCACTCTTGCCGAGAAAGCACTACTTGCTGTGCTTCCTCCAGAAGG
TGACTTTCCATATACTGTTCGGGTAAATTCAGAAGTCATGGCTTCTGATGGTTCAACATC
AATGGCATCAGTATGTGGAGGAAGCATGGCTTTAATGGATGCTGGGATACCGGTAAGGGA
GCATGTTGCTGGTGTTTCAGTGGGTCTTGTCAGTGAAGCAGACCCAACTACTGGAGATAT
TTCTAGTTACCGTATATTGACGGATATTCTAGGTCTTGAGGATCACCTGGGTGACATGGA
CT

Homology of Contig U35_41720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07310.1	903	4e-57	protein\|polynucleotide phosphorylase, putative, expressed
Brachypodium v1_2	Bradi3g48860.1	977	5e-142
Arabidopsis v10	AT5G14580.1	991	7e-118	polyribonucleotide nucleotidyltransferase, putative \| chr5:4697612-4703013 REVERSE LENGTH=991