barSeed - Barley Seed Development Database

Probe CUST_21038_PI390587928

Source Contig U35_41721

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21038_PI390587928	Hv_44K_v2	GAGGGCAACAGGTCGCCGTCGTCGCGCTCGTCGTCGCTGTCTCCCATCACCGTGGATCGC	304	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.693	1.035	1.636	0.939	1.207	0.996
Raw	3742.080	8148.147	11993.607	9124.457	4645.353	4364.950

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363392	2767	2e-24	1109 - 1168	100	60 / 60	plus	ABC07881
MLOC	AK364612	2675	2e-24	828 - 887	100	60 / 60	plus	ABC07881
MLOC	MLOC_61111.1	2543	2e-24	2052 - 2111	100	60 / 60	minus	ABC07881
MLOC	MLOC_61111.2	1907	2e-24	1418 - 1477	100	60 / 60	minus	ABC07881
JLOC1	JLOC1_39912.1	2392	8e-25	1901 - 1960	100	60 / 60	minus
Harvest21	ABC36865	418	3e-25	305 - 364	100	60 / 60	plus
Harvest35	U35_41721	418	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (418 bp)

>U35_41721 418 Hv_44K_v2
GACCGGCTGGGTTGATGTTGCTCGTCGGCCTGGCGGCGACGGCTTCACCCCGCTTCACTG
TGCCGCCTCCGGCGGCTCCTGCAACGCCGTCCAGGTCGTCAAGATGCTTCTGGACGCCGG
CGCGGACCCAGCTACTGCCGACTCCACCGGCCGCGTCCCGGCAGACGTCGTCCGGGCTCC
TCCGGCCTCGGCAGATGCCCTGGGCGATCTCGAGATACTTCTTGGCCGCCGCCGGGCCCT
CGCCGTCGCCACCTCGGCGGCTTCTGGGGCGTCGTCGCCGCCGCTTTCGTCCTCGCCAGA
TGACGAGGGCAACAGGTCGCCGTCGTCGCGCTCGTCGTCGCTGTCTCCCATCACCGTGGA
TCGCGCCAAGAAGGAGTACCCGGTGGATCCGACGCTGCCAGACATCAAGAGCAGCGTC

Homology of Contig U35_41721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None