- Probe CUST_21036_PI390587928
- Source Contig U35_41722
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_21036_PI390587928 | Hv_44K_v2 | CAACTCACTGGAAGCATCCCGATGTCGCTATCAAAACTTAACAGTTTAACAGCCATGTCA | 533 | GeneList: ivory MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.955 | 1.117 | 1.873 | 1.278 | 1.023 | 0.471 |
Raw | 30.889 | 49.384 | 82.364 | 80.857 | 23.991 | 12.611 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK370788 | 2936 | 2e-24 | 587 - 646 | 100 | 60 / 60 | plus | ABC36870 |
MLOC | MLOC_51601.5 | 1527 | 2e-24 | 497 - 556 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_51601.1 | 1618 | 2e-24 | 588 - 647 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_51601.4 | 1447 | 2e-24 | 586 - 645 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_51601.3 | 1449 | 2e-24 | 496 - 555 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_51601.2 | 1543 | 2e-23 | 592 - 649 | 100 | 58 / 58 | minus | None |
JLOC1 | JLOC1_32979.1 | 1474 | 8e-25 | 920 - 979 | 100 | 60 / 60 | plus | |
Harvest21 | ABC36869 | 661 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
Harvest35 | U35_41722 | 661 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus |
Contig Sequence (661 bp)
>U35_41722 661 Hv_44K_v2 GCTCTCTCTAGATCTGCGCGAGCCTCGGTTTCCGCGATCGCTGCCCGCCGCGGTTGCTCC CGCCGCGCCGTGCTGCTCCCGCGCGCGCGCGCGTCTGCTGATGGTCCGCTAACCCGAGGC CGGAGGGAGGGATGCGGACGGGAGGCGGGTGCCTCGAGCGGGCGGGGGGTCGGCTGCTCC TCCCGCTGCTGTTGATCGCCACGACGGTGGCATTGCTGCCGCGGGCGCTCGCCCTCACCG ACGCCGCCGACGTTTCTGCTATAAATGGATTGTATGTTGCACTTGGATCGCCAGCTCTTC CCGGATGGACTGCAAATGGTGGAGACCCCTGCGGTGAGAAGTGGCAGGGTGTTGATTGTA TTGGCTCAAGTATAGATGCGATAAATTTTGTTGCTGCAACGATGGGAGGACAGCTTGGAA GCCTAGGAAACTTCACGGCTATAACCACAATAAATCTTAGCAACAACAAAATCACCGGAA CTATACCAGATGATCTTCCAGTTACACTGCGGAATCTTTTTCTCTCGGACAACCAACTCA CTGGAAGCATCCCGATGTCGCTATCAAAACTTAACAGTTTAACAGCCATGTCACTCAATG ATAACCATCTCGATGGACAACTACCAGATGCTTTTGGTTCCCTTGTTGGACTTATAAACC T
Homology of Contig U35_41722 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os02g07960.3 | 796 | 1e-71 | protein|STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed |
Brachypodium v1_2 | Bradi3g05670.1 | 788 | 2e-83 | |
Arabidopsis v10 | None |