barSeed - Barley Seed Development Database

Probe CUST_21028_PI390587928

Source Contig U35_41727

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21028_PI390587928	Hv_44K_v2	ATGAATTCAGTAGGGTGCTATCAGAATGCAGCAAACCGGTAGAGCTTGAGCATCTTCTCA	357	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361217	2672	2e-24	598 - 657	100	60 / 60	plus	ABC20328
MLOC	MLOC_59606.14	2111	2e-24	494 - 553	100	60 / 60	plus	None
MLOC	MLOC_59606.18	1067	2e-24	706 - 765	100	60 / 60	minus	None
MLOC	MLOC_59606.11	2099	2e-24	1761 - 1820	100	60 / 60	minus	ABC20328
MLOC	MLOC_59606.2	2390	2e-24	2052 - 2111	100	60 / 60	minus	ABC20328
MLOC	MLOC_59606.16	1370	2e-24	1023 - 1082	100	60 / 60	minus	None
MLOC	MLOC_59606.9	2095	2e-24	1735 - 1794	100	60 / 60	minus	ABC20328
MLOC	MLOC_59606.8	2099	2e-24	1744 - 1803	100	60 / 60	minus	ABC20328
MLOC	MLOC_59606.15	1758	2e-24	1405 - 1464	100	60 / 60	minus	None
MLOC	MLOC_59606.17	1301	2e-24	1022 - 1081	100	60 / 60	minus	None
MLOC	MLOC_59606.13	1823	2e-24	1514 - 1573	100	60 / 60	minus	ABC20328
MLOC	MLOC_59606.12	1825	2e-24	1617 - 1676	100	60 / 60	minus	ABC20328
MLOC	MLOC_59606.5	1831	2e-24	1623 - 1682	100	60 / 60	minus	ABC20328
JLOC1	JLOC1_38804.6	2014	8e-25	243 - 302	100	60 / 60	plus
JLOC1	JLOC1_38804.5	2019	8e-25	243 - 302	100	60 / 60	plus
JLOC1	JLOC1_38804.4	2062	8e-25	286 - 345	100	60 / 60	plus
JLOC1	JLOC1_38804.3	2486	8e-25	336 - 395	100	60 / 60	plus
JLOC1	JLOC1_38804.2	2348	8e-25	286 - 345	100	60 / 60	plus
JLOC1	JLOC1_38804.1	2353	8e-25	286 - 345	100	60 / 60	plus
Harvest21	ABC36880	559	3e-25	358 - 417	100	60 / 60	plus
Harvest35	U35_41727	559	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_41727 559 Hv_44K_v2
GATGGGTCGGAGCCGCCCCCTACTCCGGCGGGGCGGCGACCTACTCCGGCGGGGCGCGGC
GACGTGCGGGACGCGAGGGGTCCGGTGGCAGCGCAACTCGCGCCGCCGCCCAACCTGCGC
CGTTTGGCGGGAGTGCGCCCCGGCGTGGCACCGAAGCCGTGCGTCGTCTCCTGCTTCTCT
AGGCAGAGGCGGTGATACTGGAAAGTCCGAGCAAGAGTGTTACTGCATATCTCGAGGCGG
TTGATAAGTTAAAAAGCGCCGAGGATTTCTTCACTTCCAAAAGAATCGGTAAAGCCGGTG
ACGACGCGCTCAAACGTGTTGATGAATTGCTTCACAAGGCAGCAGCCGAGTTGGAGAATG
AATTCAGTAGGGTGCTATCAGAATGCAGCAAACCGGTAGAGCTTGAGCATCTTCTCAGCT
GTCTTCCAAGCCGTTCATCAGCGAAAGATTCTGCTGAAAGCCAGCCAAATCCGGGTGCGG
TGCGCTCTCTTNCTACGCTCGTTGATCCGCGCTACGTGCCTCGACTCTCAAAGTTAGCTT
AGAAATCAGTCGAACTTGG

Homology of Contig U35_41727 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None