- Probe CUST_21026_PI390587928
- Source Contig U35_41728
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21026_PI390587928 | Hv_44K_v2 | TATTCGCTAGACACAAAACAAACTTCTTTGTAATGTGGCCAACGCTGCCTTGTTTGGCGG | 74 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.417 | 3.730 | 2.177 | 0.837 | 0.426 | 0.380 |
| Raw | 23.495 | 103.646 | 47.772 | 27.973 | 3.514 | 2.906 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62278.1 | 4456 | 2e-24 | 2938 - 2997 | 100 | 60 / 60 | minus | ABC12495 ABC36881 |
| MLOC | MLOC_62277.1 | 2969 | 2e-24 | 1356 - 1415 | 100 | 60 / 60 | minus | ABC12495 ABC36881 |
| JLOC1 | JLOC1_40744.1 | 2626 | 8e-25 | 1759 - 1818 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40743.1 | 3173 | 8e-25 | 1261 - 1320 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC36881 | 389 | 3e-25 | 75 - 134 | 100 | 60 / 60 | minus | ABC36881 |
| Harvest35 | U35_41728 | 389 | 3e-25 | 75 - 134 | 100 | 60 / 60 | minus |
Contig Sequence (389 bp)
>U35_41728 389 Hv_44K_v2 TTTTTTTTTTTTTTTTTATCGCAAGCACAGTCAGTTTGAGAAGGTTTCCATGGTCAGACC CAGCGAGAGCATGCCCGCCAAACAAGGCAGCGTTGGCCACATTACAAAGAAGTTTGTTTT GTGTCTAGCGAATAGGGGTGTAATGCTCCATCTGCATCTGGTGCAGCGCGGCTTCGGAGC CGAAGCTGTGGCGGCTCGGGGACCTCCTGGAGCGGGTCCTCGACGGCGTCATTGGGCCCG CCTTGACACGCGGCGACCGCTGCGCAACCGGCGGCCTGCTGGAGCGAGCAAAGCCCATGT CGCTGGCGATGGACGGCATCGGCGACATGGACGGTATTGGTGACATGAGGCGGTCGGCGA AGGACGGGAAGCACTGCTCCGAGTACGCG
Homology of Contig U35_41728 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |