barSeed - Barley Seed Development Database

Probe CUST_21024_PI390587928

Source Contig U35_27436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21024_PI390587928	Hv_44K_v2	GTTGAAGAGTCCGAAATATGTGAACAAGGAGCTCGTTGTGGATACATATTTCAAGATGGA	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51331.1	3492	2e-24	1036 - 1095	100	60 / 60	minus	None
MLOC	MLOC_51331.3	3071	2e-24	931 - 990	100	60 / 60	minus	None
MLOC	MLOC_51331.4	3041	2e-24	686 - 745	100	60 / 60	minus	None
MLOC	MLOC_51331.2	3853	2e-24	1012 - 1071	100	60 / 60	minus	None
JLOC1	JLOC1_32786.1	3792	8e-25	2684 - 2743	100	60 / 60	plus
Harvest35	U35_27436	610	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_27436 610 Hv_44K_v2
GGCAATTCAGACAAAAAGGGAACTAGCCCTTAATGGTCAGATTGCTTCATTTCCTTACGC
AGATATTGATCACGAGGAAATGGATGGGATGGAGTTTTTCTCACAAGAGGAAAAATTGTC
TGACTGTTCGGCAAAAGATGACCCAACATTTACAGATGGCATAGAGTTTGATATTAAGGA
GCCAGATGACAGGAACCAGAGGAATGGACATCTAGGTCAAGATTCAGGTGGCCATCTGGT
TAGACAAAATGGCAGGCAAAAGGTTAAGAGGAAGGTATTTCCTATTTTTAAGAACCGTAA
TGGCACTAAACTAGAATTTCCGGAGGCTAATAAAGATAAGTTGGATGAGGGGGTTTCAGT
GGGTGCAAATGGTCATCTGAGCTACGACTTAAGTGGAAGTACTCTTTGCAAGGATCAAAG
CTCAGAAAAACACAATTCAAGTATCTTGCACAAGAATAACTTGTCGATTGGTGCCAATAC
AGTTACTTGCAACACTGATAGGGATAAGTACAAGCTTATAGAGGATTTCTTCAATGTGGA
AGTTGCTAATGTTGAAGAGTCCGAAATATGTGAACAAGGAGCTCGTTGTGGATACATATT
TCAAGATGGA

Homology of Contig U35_27436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12160.2	964	1e-69	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g69590.1	1116	1e-91
Arabidopsis v10	None