barSeed - Barley Seed Development Database

Probe CUST_21023_PI390587928

Source Contig U35_27437

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21023_PI390587928	Hv_44K_v2	AACCAGTCACCCAGGACACTATCTTATAGTCCAACGGAAAATGCTGTGTTGATTTGCTCT	741	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36655.1	3728	2e-24	2646 - 2705	100	60 / 60	minus	ABC09290 ABC14269
MLOC	MLOC_36655.2	3882	2e-24	2800 - 2859	100	60 / 60	minus	ABC09290 ABC14269
MLOC	MLOC_36655.3	2450	2e-24	2283 - 2342	100	60 / 60	minus	ABC09290 ABC14269
JLOC1	JLOC1_23636.2	3702	8e-25	1024 - 1083	100	60 / 60	plus
JLOC1	JLOC1_23636.1	3990	8e-25	1024 - 1083	100	60 / 60	plus
Harvest21	ABC27773	587	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_27437	892	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (892 bp)

>U35_27437 892 Hv_44K_v2
CGTATCTGGAACTGGCAGTCACGTACTTGTGTGGCTGTGCTCACTGGGCATAATCACTAT
GTCATGTGCGCGTCCTTCCACCCCAAGGAGGACCTGGTTGTGTCAGCATCGCTAGATCAG
ACTGTTCGTGTTTGGGATATTGGTGCCCTGAGGAAGAAGACGGTGTCACCTGCAGATGAC
ATCATGCGTCTCACTCAGATGAACACTGATCTGTTTGGGGGCGTCGATGCGGTTGTGAAA
TATGTCTTGGAAGGCCATGACCGTGGTGTCAACTGGGCATCCTTCCATCCCACATTGCCA
CTCATTGTTTCTGGGGCAGATGACCGGCAAGTGAAGCTGTGGAGAATGAATGATACCAAG
GCTTGGGAAGTTGATACTTTGAGGGGGCACATGAATAATGTGTCCTGTGTGATGTTCCAT
GCGAAGCAAGACATCATTGTGTCCAACTCAGAGGACAAAAGCATTCGCATCTGGGATGCC
ACAAAGCGAACCGGCATTCAGACATTTAGGCGGGAACATGACCGTTTCTGGATCCTTGCT
GCCCACCCTGAAATGAATCTTCTTGCTGCTGGTCATGACAGTGGCATGATTGTGTTTAAA
TTAGAGAGGGAACGCCCAGCTTTCAGCGTGAGTGCTGATACTGTGTTCTATGTGAAGGAC
AGATTCCTCCGGTTCTTTGAGTACTCCACCCAGAAGGAAGTTCAGGTGGCTCCAATAAGA
AGACCAGGATCCGTCAGCTTGAACCAGTCACCCAGGACACTATCTTATAGTCCAACGGAA
AATGCTGTGTTGATTTGCTCTGATGTGGACGGCGGCTCATATGATCTGTACATTGTTCCT
AAGGATTCTGCTGGCAGGGCTGATTATTTGCAAGAGGCAAAGAAGGGAGCTG

Homology of Contig U35_27437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g04110.2	1219	protein\|coatomer alpha subunit, putative, expressed
Brachypodium v1_2	Bradi1g78470.1	1219
Arabidopsis v10	AT1G62020.1	1216	Coatomer, alpha subunit \| chr1:22919814-22923728 FORWARD LENGTH=1216