barSeed - Barley Seed Development Database

Probe CUST_21017_PI390587928

Source Contig U35_39413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21017_PI390587928	Hv_44K_v2	AAGTGCGTCCGCCAAATTGTCGTAATCTGGTTGTCATGTTTTAGAGCATCTCCGTTTGAC	508	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.113	3.337	1.993	1.785	0.981	0.795
Raw	8.660	44.894	21.403	33.283	4.499	4.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74702.4	1931	2e-24	1697 - 1756	100	60 / 60	plus	None
MLOC	MLOC_74702.1	1738	2e-24	1555 - 1614	100	60 / 60	plus	None
JLOC1	JLOC1_49808.1	1676	8e-25	1437 - 1496	100	60 / 60	plus
Harvest21	ABC35546	570	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_39413	570	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_39413 570 Hv_44K_v2
GCACGCACGTGACCACCCGCGTGATGGGCACTCACGGCTACGCGGCGCCGGAGTACGTGC
AGACGGGCCACCTCACGATGAAGAGCGACGTGTACAGCTTCGGGGTGGTGCTTCTGGAGC
TCCTGACGGGCCGCCGGGCCATGGAGCACGTCCGTGGCCGGAGTGTGCATGCTGAGCAAA
CCATCAAGCTCGTGGAGTGGACCCGGCCCTACCTCGCCAGCAGCCGCCGCCTGCGCTGCA
TCATGGACCCCAAGCTGGCGGGGCACTACTCCGTCAAGGGCGCGCGCGCTGTGGCGCACC
TGGCGGTGCAGTGCACTAGCGCGCAGCCCCGGGACAGGCCAAGCATGACTGTTGTGGTCG
GCGCGCTTGAGCGGCTGGAAGGACTCAAGGACATGGCCGTCAGCATCGGGCTCTGGCCCA
CCGCGCCTGTGGCCGGGAGGAACGCGGTCTCCGCCAAAATTCGGACCGAGATGAAGGGCG
CCGGCGCCGGCGTCGTTTTGAGGCAGAGAAGTGCGTCCGCCAAATTGTCGTAATCTGGTT
GTCATGTTTTAGAGCATCTCCGTTTGACCC

Homology of Contig U35_39413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24930.2	328	7e-98	protein\|tyrosine protein kinase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g61690.1	448	1e-99
Arabidopsis v10	AT1G61590.1	424	1e-57	Protein kinase superfamily protein \| chr1:22723691-22726022 REVERSE LENGTH=424