barSeed - Barley Seed Development Database

Probe CUST_21010_PI390587928

Source Contig U35_15462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21010_PI390587928	Hv_44K_v2	AATTTGACCAAGGACACAACTCTTGTAGTTTTCCAATGGTACCGCAACATCTGGGCAACC	1134	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.244	1.431	1.155	0.979	0.366	0.402
Raw	163.274	287.918	206.033	277.298	35.699	43.368

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33465.1	1289	8e-25	1168 - 1227	100	60 / 60	plus
Harvest21	ABC03487	1113	3e-25	22 - 81	100	60 / 60	minus	ABC03487
Harvest35	U35_15462	1215	3e-25	1135 - 1194	100	60 / 60	plus

Contig Sequence (1215 bp)

>U35_15462 1215 Hv_44K_v2
AATAAGACGCAGCGCGCCGTCTAGTCCCCCAGCCGAGGTCACACAAGCCCGCAGCCGCGC
ACACAGAGCAAGCGACGCACCACCCAGGCCCAGCTCCGGCGAGATCTCCGGCGACCCTTC
GAGATGAGCCGCGGATCGGGCGCCGGCTACGACCGCCACATCACCATCTTCTCCCCGGAG
GGCCGCCTCTACCAAGTCGAGTACGCGTTCAAGGCGGTCAAGTCGGCGGGGGTCACCTCG
ATCGGCGTCCGAGGCAAGGACTCCGTCTGCGTCGTCACCCAGAAGAAAGTCCCGGACAAG
TTGTTGGATGACACCAGCATCACGCACCTCTTCTCCATTACCAAGTACACCGGCTTGCTT
GCCACCGGCCTCACAGCTGATGCGAGGTCCTTGGTCTCCCAAGCAAGAAATGAAGCAGCC
GAGTTCCGTAAAAAATGGGGATATGAGATGCCTGTGGATGTATTAGCAAAATGGATTGCA
GACAAAGCACAAATATACACGCAGCATGCATACATGAGACCCCTTGGTGTAGTTGCTATG
GTCCTGGGTTATGATGAGGAGAAAAATGCTCAGCTCTTCAAGTGTGACCCCGCAGGTCAC
TTCTTTGGACACAAGGCAACTAGTGCCGGACTTAAGGAGCAGGAAGCAATAAATTTTCTG
GAGAAGAAAATGAAGGATAGCCCGCAGTTCACATATGACGAAACTGTTCAGATTGCGATT
TCTGCATTGCAATCTGTTCTGCAGGAAGATTTCAAGGCTACCGAGATCGAGGTCGGTGTT
GTGAGGAAAGAAGACCGTGTCTTCCGGTCACTCACGACAGAGGAGATTGATCAGCACCTA
ACAGCCATTAGCGAGCGCGACTGAGCTATGTGACTGTAGCTGTCAATGCACCCATAAACT
GTTATTTTGTTTCATGGCCAGCCAAGAAACATTCAGTGAATCATTTCATGTGTAGCAAGG
AAGACGGGCCTCCACTCTGCCATGTATTAGTCGGATCATCCTTTGTGTGGTTGAATTTGC
TACGATTAAATTTGATGTTGCTGGCAAAAAAAAAAAAAAAAATTTGGGCTGTTTTATTTT
CTTCTCCTGTCTCTATGTGGTGCTGCCACTCTTTCGATGTTAAGTTTGGCCATCAATTTG
ACCAAGGACACAACTCTTGTAGTTTTCCAATGGTACCGCAACATCTGGGCAACCTTAAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_15462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08280.2	247	3e-164	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi1g72640.1	247	1e-169
Arabidopsis v10	AT2G05840.1	246	6e-149	\| Symbols: PAA2 \| 20S proteasome subunit PAA2 \| chr2:2234226-2236053 FORWARD LENGTH=246