barSeed - Barley Seed Development Database

Probe CUST_2100_PI390587928

Source Contig U35_18407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2100_PI390587928	Hv_44K_v2	GAGAACCCTACAGAAATGATGGCTAATTGATTTTACATATCTGGAACAGGTAAATTTTGG	1548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13650.1	1611	2e-24	34 - 93	100	60 / 60	minus	ABC01734
JLOC1	JLOC1_9255.1	1656	8e-25	1505 - 1564	100	60 / 60	plus
Harvest21	ABC01734	815	3e-25	245 - 304	100	60 / 60	minus	ABC01734
Harvest35	U35_18407	1719	3e-25	1549 - 1608	100	60 / 60	plus

Contig Sequence (1719 bp)

>U35_18407 1719 Hv_44K_v2
GACCAGTTGGGCTTCGCTAGGTGGGATTATGCTCAGCATAACAGGGACAGAAGCTCTATT
TGCTGACCTGTCATATTTTCCTGTGCAAGCTATTCAGATTGCTTTCACGACGGTTGTGTT
CCCATGTCTTCTTTTGCAATATACTGGTCAAGCTGCCTATATAGCCACGCACAAAGACAA
AGTCTCCCACTCCTTCTATTTTTCTCTTCCAGAGCGTATACTTTGGCCAGCATTTGTTGT
TGCAACGGCTGCTGCAATAGTTTCTAGCCAGGCAACTATTTCCGCAACATACTCAATCAT
CAAGCAAGCGCTTGCGGTGGGCTGCTTCCCCAGAGTGAAGATCATCCATACTTCCAAGAA
GTATCTTGGCCAGATATACAGCCCCGATATTAATTGGATCCTCCTGATTCTCTGTATTGC
CGTCACGGCTGGGTTCAAGAATCAGTCCCAGATTGCAAATGCTTATGGTACAGCTGTGAT
AATGGTTATGCTTGTGACGACATTTCTCATGATCCCCATAATGCTGCTGGTATGGCGCAG
CCATTGGGCCTTGGTCCTGCTCTTCACGGTGCTGTCGCTGGTCGTCGAGATCCCGTACTT
GACCGCCGTCATGAAGAAGATTGACCAGGGCGGCTGGGTTCCTCTGGTGTTCGCGGCGGC
CATCCTCCTCATCATGTACGTGTGGCATTACGGCACGCTCAAGCGCTACGAGTTCGAGAT
GCACAGCAAGGTGTCCATGGCGTGGATCCTGGGCCTCGGCCCGAGCCTCGGCCTGGTCCG
GGTGCCCGGGATAGGCCTGGTGTACACGGAGCTGGCGAGTGGTGTCCCCCACATCTTCTC
GCACTTCATCACCAACCTCCCGGCGATCCACTCCACCCTGGTGTTCGTCTGCGTCAAGTA
CCTGCCGGTGTACACCGTGCCGCTGGACGAGCGGTTCCTCGTGAAGCGGATCGGCCCCAA
GAACTTCCACATGTTCCGCTGTGTGGCACGGTATGGCTACAAGGACATCCACAGGAAGGA
CGACGACTTCGAGAAGATGCTCTTCAGCAGCCTGCTGCTCTTCGTCCGGCTGGAGAGCAT
GATGGAGGAGTACTCGGACTCCGACGACTACAGCGCCCTGGACCAGCAGGAGCTGATCGA
CGAGGCAAGCAACGACGCCAGGTCCGCCGCCGACCTCAGCTACGCCTCCCGTGACTCCAT
TGTGCCGGTGCGCTCCCCGAACCTCCCGGGGTCCATGTCGTCGGCGCAGACTACAACGGC
GACCCTGGGGTTTGAGACCGTGGGCGACGAGGTCGCGTTCCTGAACTCGTGCAGGGACGC
CGGGGTCGTGCACATCCTCGGGAACACCGTCATCAGGGCTCGCAGGGACTCGGGGCCGCT
GAAGAAGCTCGCCATCGACTACCTCTACGCCTTCCTGAGGAAGATCTGCAGGGAGAACAG
CGCCATCTTCAATGTTCCCCATGAGAGCCTGCTGAATGTTGGGCAGGTGTTCTATGTGTA
GCTAAACTGGATGTAAATCACTGTGTTTGTGTGTAGATTATTTTACAGGAGAACCCTACA
GAAATGATGGCTAATTGATTTTACATATCTGGAACAGGTAAATTTTGGTAATAAAACCGT
AAATTTCAGTGTAAAAAAAAAAAAGATACGAATCTGAATCAAATTATGCAATTAAGATAT
GAATACATATCATATTAGAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g38960.3	712	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi4g38070.1	789
Arabidopsis v10	AT1G31120.1	796	\| Symbols: KUP10 \| K+ uptake permease 10 \| chr1:11104375-11107361 REVERSE LENGTH=796