barSeed - Barley Seed Development Database

Probe CUST_21008_PI390587928

Source Contig U35_15464

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21008_PI390587928	Hv_44K_v2	GCCTTGCTTGATTAACAGAAGTGCAGCAATGTCAATAAATTATTAAGCCATTCCTGATAA	647	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.017	0.114	0.639	1.886	1.330	2.381
Raw	2.991	57.472	276.410	1353.252	294.921	591.131

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60915.1	918	6e-24	5 - 63	100	59 / 59	minus	ABC17916
JLOC1	JLOC1_39758.1	1889	3e-24	836 - 894	100	59 / 59	plus
Harvest35	U35_15464	722	3e-25	648 - 707	100	60 / 60	plus
Harvest35	U35_15465	2030	2e-21	1978 - 2030	100	53 / 53	plus

Contig Sequence (722 bp)

>U35_15464 722 Hv_44K_v2
AGCTTCTATCATCATGGGTCCAATGCTTCAGCACAACAAAGTGTCTGGTGATCAAGAAAT
GAATGAGGAATACTTCTCTCGCTTGTACGAGTGGAGACTGAACTTGAAATCCAAGGCAGT
TGCAGGAGAATGGCTAACCGGGACAGATGTCGCTATGGAATTCCCGGTTATCAATGACAA
GTATGTTGGCTTGCATCACAGGTACGCATACGCACAGGTGGTGAACGTGGAAGGGAGTAT
GGCTGGTGGTTGTGGAACAGTGAGACCAAAGTTTGGAGGTTTTGCAAAACTATATCTTGA
CCAAGAAATCAAGGAGTCTTGTGGAGATTCAATCCATGTGGAGTACCACCACCTTGAAAC
AAATCAATTCTGCTCAGGAGCAATTTTTGTGGCGAAAGAGGATGCGCTACATGAGGATGA
TGGATGGATAATCTCTTTTGTGCACGATGAGGGCACAAATATATCACAGGCACATATTAT
CGACGCACGAAGATTTGAGAGTGGGCCAGTTGCTAAAATAACATTGCCACAAAGAGTACC
CTATGGCTTTCATGGAGCATTTGTCTCAAAAACTTAATGAAAGCAAACATAGCTCTATAA
TAAGTGTAAATTACCTGTAGTTCATATTAACCGGTGACTGGCCATGTGCCTTGCTTGATT
AACAGAAGTGCAGCAATGTCAATAAATTATTAAGCCATTCCTGATAAAAAAAAAAAAAAA
AA

Homology of Contig U35_15464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g28240.1	575	4e-63	protein\|carotenoid cleavage dioxygenase, putative, expressed
Brachypodium v1_2	Bradi3g34707.1	589	4e-109
Arabidopsis v10	None