barSeed - Barley Seed Development Database

Probe CUST_21007_PI390587928

Source Contig U35_15465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21007_PI390587928	Hv_44K_v2	GATGTCGCTATGGAATTCCCGGTTATCAATGACAAGTATGTTGGCTTGCATCACAGTGAG	1534	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.086	0.119	0.583	1.886	1.340	1.988
Raw	4.892	12.414	61.199	323.218	72.212	121.416

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248931.1	1876	3e-22	1307 - 1362	100	56 / 56	plus	ABC17916
MLOC	MLOC_25908.1	1846	3e-22	70 - 125	100	56 / 56	minus	ABC17916
JLOC1	JLOC1_17647.2	835	1e-22	622 - 677	100	56 / 56	plus
JLOC1	JLOC1_17647.1	988	1e-22	775 - 830	100	56 / 56	plus
Harvest21	ABC39552	310	3e-25	92 - 151	100	60 / 60	plus
Harvest21	ABC17916	580	5e-23	514 - 569	100	56 / 56	minus	ABC17916
Harvest35	U35_15465	2030	3e-25	1535 - 1594	100	60 / 60	plus
Harvest35	U35_15464	722	5e-23	146 - 201	100	56 / 56	plus

Contig Sequence (2030 bp)

>U35_15465 2030 Hv_44K_v2
GTATCAAACAAGAGTTGGACCAACTCGACACCAGAGGAAATAGTATGAAGCATCTAGGAG
GAGGAGCGACACCACAAGAAGGAGGTTTTGCTGAAATCCTCGAGACCAAGCTGCAATAAG
ACCGCAAGGGAAATACCATCACCAGCAGAAGAAGCATACAACTGAGCTCATTACAATGGT
AGCTCTAGCATCCACCTATATCCAGCCACCGCCACACATCTGCAGGTGCAGCAGCAGCAG
CAGAAGAAGCCCACCCATCACACGGCCTAATGCGACTCGCTTCTCTACGCACATCAAAAC
CACGCCATATCTGAAGGAGCTTCAGCGACATCTTACCGTCAGACTTGGAGAGGCGTCAGA
TGCCATGAGCAATGCTTACAAGGCACTCCTGGATGCATTTGTTGAATCCACTTTCACATT
CAGTGATCAGCTCCTGCGCCCCACCGAGAGCAATTTTGCACCGGTCGATGAAGTCGGTGA
AAGGATAAAGATCATGGAGATAGAAGGAACAATCCCTGCAGACTTTCCAGAGGGTGTCTA
TATTAGAAATGGTTCGAACCCTCTGTTCGGAGCCCTGCACACGGTGAGCTCCATCTTTGG
GCAGACCGAAGACATCTGGGTGGAGGGAGAAGGCATGCTCCACGCCCTCTACTTCAGCCG
GAGCAGCGTCGACGGCACCGCCGCCTGGTCCTTGTCCTACGGCAACCGCTACGTGCAATC
CGACAGTTACACAGTCGAAAACGCTCGCCGACGGCCATGCTTTCTCTCAGTCACAAAAGG
GAATCGTCTCGCCATGCTCGCTGCAAGCCTTCTAAACATGCTGAGGTTTGGAAAAGTGAT
GCGGAGCATGAGCAATACCAGTGTGTTCATGCATGCCGGCAGAGTCTTCGCGGCTGCAGA
GAATGACATTCCCCATGAGCTGAACTTGCAAAGCCTTGACACGATCGCAAGCTGGTCCAT
CGGCGGAGACTGGATCCTGCCGTTCACAGCACACCCGAAGGTTGTTCCTGAGTCAGGAGA
GTTGGTAATCTCAGGGATCAACATTATGAAACCCTACCTAACGATTGGACTTGTCTCAGA
GGATGGAATGAAGCTCGAGCAAATGGTTGATCTTAAGCTAGACAGATGCACATTTTGCCA
TGAAATAGGGATAACTAAAATGTACAACATTATCATGGATATGCCACTTACCCTAAGCGC
AAGTAGGATTCTACGAGCAGCCCCTTTGATGGAATACGAGAAGGAAAGCTATGCAAGAAT
CGGGGTCATGCCCCGTAACGGAGATGCAGAGTCAGTAATATGGTTTGATGTAGAACCATT
CTGCACAATGCATCTTGTCAACTGCTTCGAGGAAGGTGATGAGGTTGTTGTCAGGGGATT
TCGTGTGCCAGCTTCTATCATCATGGGTCCAATGCTTCAGCACAACAAAGTGTCTGGTGA
TCAAGAAATGAATGAGGAATACTTCTCTCGCTTGTACGAGTGGAGACTGAACTTGAAATC
CAAGGCAGTTGCAGGAGAATGGCTAACCGGGACAGATGTCGCTATGGAATTCCCGGTTAT
CAATGACAAGTATGTTGGCTTGCATCACAGTGAGACCAAAGTTTGGAGGTTTTGCAAAAC
TATATCTTGACCAAGAAATCAAGGAGTCTTGTGGAGATTCAATCCATGTGGAGTACCACC
ACCTTGAAACAAATCAATTCTGCTCAGGAGCAATTTTTGTGGCGAAAGAGGATGCGCTAC
ATGAGGATGATGGATGGATAATCTCTTTTGTGCACGATGAGGGCACAAATATATCACAGG
CACATATTATCGACGCACGAAGATTTGAGAGTGGGCCAGTTGCTAAAATAACATTGCCAC
AAAGAGTACCCTATGGCTTTCATGGAGCATTTGTCTCAAAAACTTAATGAAAGCAAACAT
AGCTCTATAATAAGTGTAAATTACCTGTAGTTCATATTAACCGGTGACTGGCCATGTGCC
TTGCTTGATTAACAGAAGTGCAGCAATGTCAATAAATTATTAAGCCATTC

Homology of Contig U35_15465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g28240.1	575	0.0	protein\|carotenoid cleavage dioxygenase, putative, expressed
Brachypodium v1_2	Bradi3g34707.1	589	0.0
Arabidopsis v10	None