barSeed - Barley Seed Development Database

Probe CUST_21000_PI390587928

Source Contig U35_27440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21000_PI390587928	Hv_44K_v2	TGGTTAATTAATTAGTACTACTAGTGCCTAGGTAGCGCTGGGAACCATTACACTACAACG	426	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.899	5.179	1.423	0.823	0.307	0.293
Raw	156.863	285.619	63.053	59.433	7.098	7.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16744.1	1484	2e-24	1330 - 1389	100	60 / 60	plus	None
JLOC1	JLOC1_11558.1	1442	8e-25	1281 - 1340	100	60 / 60	plus
Harvest21	ABC25492	486	3e-25	427 - 486	100	60 / 60	plus
Harvest35	U35_27440	486	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_27440 486 Hv_44K_v2
GGCGCTGCTCCGCTTCGTGTACACGGACTCATGGCCGCCGGAGACAGCGGAAGAAGAGGA
ATTCGCCATGGCCCAGCATCTGCTCATGGCAGCGGACAAATACCGCATGGAGAGGCTCAA
GCTGATCTGCCAGGAGAAGCTGTGCAAGAACATCGCGGCCGGCACGGCGGCGAGCATACT
GGCATTGGCCGAGCTGCACCACTGCCATGAGCTCAAAGGCGCATGCTTCCATTTCCTCAG
CTCTCCGAGGAACCTGACGGCAGCCATGGCCGCCGACGACTTCGAGAATCTGCGCACAAG
CTTCCCCTTTCTTGTCAAGGAGGTGATTGCCAAGTGCTCGGTCGACGCCTAAGATCAGTG
ATGGTTGATTGATCGATCCCCTCATGTTCACTAATTATGCTTTGCTTGCTACCGGCAGTG
CACGGATGGTTAATTAATTAGTACTACTAGTGCCTAGGTAGCGCTGGGAACCATTACACT
ACAACG

Homology of Contig U35_27440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None