barSeed - Barley Seed Development Database

Probe CUST_20998_PI390587928

Source Contig U35_27441

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20998_PI390587928	Hv_44K_v2	TGGGCGCGAGGGAGCGGCGGCTGCTGCAGATGCCGGTGGGTCCGGGTGGAAATGCGGTGG	658	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.239	1.369	1.032	0.834	0.633	1.034
Raw	146.934	240.194	169.639	190.057	57.126	103.814

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51028.1	3413	3e-21	627 - 686	97	59 / 61	plus	None
MLOC	MLOC_51028.2	2131	3e-21	798 - 857	97	59 / 61	plus	None
JLOC1	JLOC1_32561.1	2267	2e-21	781 - 840	97	59 / 61	plus
Harvest35	U35_27441	718	3e-25	659 - 718	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_27441 718 Hv_44K_v2
AGCAGAGCACGCACTCGGCTCGACACTCCAGCTAGCAAGCAGCCAGTGCCGGCCATGGCG
CCGACGTCTCCGACCTCCGCGCCGCGTCTCCTCCTCGCGCTCTCCCTCAGCCTCCTCCTC
CTCACCAGCGCCCACCAGCTGACGGCGCCATCGCCGCCCGCCGGCATTTCGCCCGAGCTC
GTGTCTACGCTGCGCGAGGCGCTGGACGCGATCGAGGAGGTGGCGTCCGTCGTCTCGACC
TTCCCCGTCGTCGGCGGCGTCCTCGGAGGAGCCGACCGCCGGCTCTCCTCCGCCATCACC
GACTGCCTTGACCTGCTCGACCTCTCCTCCGACGAGCTCTCGTGGTCCATGTCGGCCGCT
TCGCCGTCGACCGCGGGCGCGGGGGCCGCCGGCCGCGTCGGCACGGGCGACGCGCACGCC
GACCTCCGGGCGTGGCTCAGCGGCGCGCTCGGCAACCAGGACACGTGCAAGGACGGCCTC
GACGACACCGACTCCGTGCTCGGCTCGCTCGTGTCCACGGGCCTCCAGGCCGTCACGTCC
CTGCTGGGCGACGGCCTCGGCCAGGTCGCCGCCGCCGGCGAGGAAGCCGCGTCGTCCGCC
CGCACCAGTGGTCACCGGGGCCGCGGNCTCGGCGAGGGGGCTCTGCNACCGCACTGGCTG
GGCGCGAGGGAGCGGCGGCTGCTGCAGATGCCGGTGGGTCCGGGTGGAAATGCGGTGG

Homology of Contig U35_27441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None